Publications
2023-2014
M Zegarra, A Aguilar-Galvez, R Chirinos, D García-Ríos, M Calsin, R Pedreschi, D Campos. Mitigación de la formación de acrilamida en papas fritas tipo chips mediante la adición de antioxidantes fenólicos de Inca muña (Clinopodium bolivianum). Química Nova 45, 1223-1229.
P Olmedo, B Zepeda, J Delgado-Rioseco, C Leiva, AA Moreno, K Sagredo, F Blanco-Herrera, R Pedreschi, R Infante, C Meneses, R Campos-Vargas. Metabolite Profiling Reveals the Effect of Cold Storage on Primary Metabolism in Nectarine Varieties with Contrasting Mealiness. Plants, 12 (4), 766.
I Hernández, V Molina, C Fuentealba, JE Alvaro, BG Defilippi, R Pedreschi. Do Rootstocks Influence Global Fruit Quality, Postharvest Performance and Metabolite Profiles of Persea americana cv. Hass? Horticulturae, 9 (2), 184.
JP Parra-Rojas, P Sepúlveda-Orellana, D Sanhueza, H Salinas-Grenet, H Temple, P Dupree, S Saez-Aguayo, A Orellana. GoSAMTs are required for pectin methyl-esterification and mucilage release in seed coat epidermal cells. Frontiers in Plant Science, 14, 1099573.
SR Pereira, B Díez, J Cifuentes-Anticevic, S Leray, F Fernandoy, C Marquardt, F Lambert. Hydrological connections in a glaciated Andean catchment under permafrost conditions (33° S). Journal of Hydrology: Regional Studies, 101311.
Sanae Kobayashi F, Maldonado JE, Gaete A, Araya I, Aguado-Norese C, Cumplido N, Díaz S, Espinoza A, Fernández E, Gajardo F, González-Ordenes F, Hauyon K, Maldonado P, Maldonado R, Pochet I, Riveros A, Sandoval R, Sepúlveda-González A, Stuardo C, Tapia-Reyes P, Thornton C, Undurraga S, Varas M, Valdivieso C, School Earwig Genome Consortium, Gutiérrez RA, Orellana A, Montecino M, Maass A, González M, Allende ML, Hodar C, Irles P. DNA sequencing in the classroom: complete genome sequence of two earwig (Dermaptera; Insecta) species. Biological Research, 56.
L Gálvez Ranilla, G Zolla, A Afaray-Carazas, M Vera-Vega, H Huanuqueño, H Begazo-Gutiérrez, R Chirinos, R Pedreschi, K Shetty. Integrated metabolite analysis and health-relevant in vitro functionality of white, red, and orange maize (Zea mays L.) from the Peruvian Andean race Cabanita at different maturity stages. Frontiers in Nutrition, 10, 1132228.
A Figueroa‐Merma, R Chirinos, D García‐Rios, R Pedreschi, A Aguilar-Galvez, D Campos. Bioactive compounds characterisation of Peruvian Dysphania ambrosioides (L.) Mosyakin & Clemants leaves by GC/MS and UPLC–ESI–Q/TOF–MSn techniques. International Journal of Food Science & Technology, 58 (3), 1219-1229.
A Aguilar-Galvez, D García-Ríos, D Ramírez-Guzmán, J Lindo, R Chirinos, R Pedreschi, D Campos. In vitro and in vivo biotransformation of glucosinolates from mashua (Tropaeolum tuberosum) by lactic acid bacteria. Food Chemistry, 404, 134631.
E Castro-Nallar, V Berríos-Farías, B Díez, S Guajardo-Leiva. Seasonal and Spatially Distributed Viral Metagenomes from Comau Fjord (42° S), Patagonia. Microbiology Resource Announcements, 12 (4), e00082-23.
D Mandakovic, C Aguado-Norese, B García-Jiménez, C Hodar, JE Maldonado, A Gaete, M Latorre, MD Wilkinson, RA Gutiérrez, LA. Cavieres, J Medina, V Cambiazo, M Gonzalez Testing the stress gradient hypothesis in soil bacterial communities associated with vegetation belts in the Andean Atacama Desert. Environmental Microbiome, 18 (1), 1-17.
MG Beiro-Valenzuela, I Serrano-García, RP Monasterio, MV Moreno-Tovar, E Hurtado-Fernández, JJ González-Fernández, JI Hormaza, R Pedreschi, L Olmo-García, A Carrasco-Pancorbo. Characterization of the Polar Profile of Bacon and Fuerte Avocado Fruits by Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Distribution of Non-structural Carbohydrates, Quinic Acid, and Chlorogenic Acid between Seed, Mesocarp, and Exocarp at Different Ripening Stages. Journal of Agricultural and Food Chemistry, 71 (14), 5674-5685.
S Guajardo-Leiva, KN Mendez, C Meneses, B Díez, E Castro-Nallar. A First Insight into the Microbial and Viral Communities of Comau Fjord—A Unique Human-Impacted Ecosystem in Patagonia (42° S). Microorganisms 11 (4), 904.
MA Ormeño, JE Maldonado, M González, H Silva, JI Covarrubias. Evaluation of a Red Grape Marc Extract as a Natural Nitrification Inhibitor and its Effect on Soil Bacterial Community. Journal of Soil Science and Plant Nutrition, 1-15.
JM Pacheco, L Song, L Kuběnová, M Ovečka, V Berdion Gabarain, JM Peralta, T Urzúa Lehuedé, MA Ibeas, MM Ricardi, S Zhu, Y Shen, M Schepetilnikov, LA Ryabova, JM Alvarez, RA Gutierrez, G Grossmann , J Šamaj, F Yu, JM Estevez. Cell surface receptor kinase FERONIA linked to nutrient sensor TORC signaling controls root hair growth at low temperature linked to low nitrate in Arabidopsis thaliana. New Phytologist, 238 (1), 169-185.
E Ponce, G Núñez-Lillo, C Bravo, J Vidal, P Tapia-Reyes, C Meneses, R Pedreschi, C Fuentealba.Cell wall disassembly, metabolome and transcriptome analysis in sweet cherry fruit with induced surface pitting. Postharvest Biology and Technology, 198, 112262.
J Zuñiga-Hernandez, C Meneses, M Bastias, ML Allende, A Glavic. Drosophila DAxud1 Has a Repressive Transcription Activity on Hsp70 and Other Heat Shock Genes. International Journal of Molecular Sciences, 24 (8), 7485.
D García-Ríos, JE Alvaro, ME Zuñiga, D Campos, A Aguilar-Galvez, MS Mariotti-Celis, F Pedreschi, R Pedreschi.Targeted Primary and Secondary Metabolite Analysis of Colored Potato “Michuñe Negra” Grown in Soilless Culture and during Prolonged Cold Storage: Implications in Acrylamide Formation during Frying. Agronomy, 13 (5), 1209.
V Chaput, J Li, D Séré, P Tillard, C Fizames, T Moyano, K Zuo, A Martin, RA Gutiérrez, A Gojon, L Lejay. Characterization of the signalling pathways involved in the repression of root nitrate uptake by nitrate in Arabidopsis thaliana. Journal of Experimental Botany, erad149.
M Tamayo, L Sepúlveda, EP Guequen, P Saavedra, R Pedreschi, A Cáceres-Mella, JE Alvaro, IF Cuneo.Hydric Behavior: Insights into Primary Metabolites in Leaves and Roots of Cabernet Sauvignon and Grenache Grapevine Varieties under Drought Stress. Horticulturae, 9 (5), 566.
G Núñez-Lillo, E Ponce, C Arancibia-Guerra, S Carpentier, A Carrasco-Pancorbo, L Olmo-García, R Chirinos, D Campos, R Campos-Vargas, C Meneses, R Pedreschi. A multiomics integrative analysis of color de-synchronization with softening of ‘Hass’ avocado fruit: A first insight into a complex physiological disorder. Food Chemistry, 408, 135215.
Olmedo P, Núñez-Lillo G, Vidal J, Leiva C, Rojas B, Sagredo K, Arriagada C, Defilippi BG, Pérez-Donoso, AG, Meneses C, Carpentier S, Pedreschi R, Campos-Vargas R. Proteomic and metabolomic integration reveals the effects of pre-flowering cytokinin applications on central carbon metabolism in table grape berries. Food Chemistry 411, 135498.
D Molina-Mateo, BP Valderrama, RV Zárate, S Hidalgo, J Tamayo-Leiva, A Soto-González, S Guerra-Ayala, V Arriagada-Vera, C Oliva, B Díez, JM Campusano. Kanamycin treatment in the pre-symptomatic stage of a Drosophila PD model prevents the onset of non-motor alterations. Neuropharmacology, 109573
LG Ranilla, G Zolla, A Afaray-Carazas, M Vera-Vega, H Huanuqueño, H Begazo-Gutiérrez, R Chirinos, R Pedreschi, K Shetty. Integrated metabolite analysis and health-relevant in vitro functionality of white, red, and orange maize (Zea mays L.) from the Peruvian Andean race Cabanita at different maturity stages. Frontiers in Nutrition, 10.
G Núñez-Lillo, E Ponce, C Arancibia-Guerra, S Carpentier, A Carrasco-Pancorbo, L Olmo-García, R Chirinos, D Campos, R Campos-Vargas, C Meneses, R Pedreschi. A multiomics integrative analysis of color de-synchronization with softening of ‘Hass’ avocado fruit: A first insight into a complex physiological disorder. Food Chemistry, 408, 135215. Doi: 10.1016/j.foodchem.2022.135215
C Arancibia-Guerra, G Núñez-Lillo, A Cáceres-Mella, E Carrera, C Meneses, N Kuhn, R Pedreschi. Color desynchronization with softening of ‘Hass’ avocado: Targeted pigment, hormone and gene expression analysis. Postharvest Biology and Technology 194, 112067. https://doi.org/10.1016/j.postharvbio.2022.112067
I Serrano-García, E Hurtado-Fernández, JJ Gonzalez-Fernandez, JI Hormaza, R Pedreschi, P Reboredo-Rodríguez, M Figueiredo-González, L Olmo-García, A Carrasco-Pancorbo. Prolonged on-tree maturation vs. cold storage of Hass avocado fruit: changes in metabolites of bioactive interest at edible ripeness. Food Chemistry, 133447. https://doi.org/10.1016/j.foodchem.2022.133447
P Pidal, J Fernández, C Airola, M Araujo, AM Menjiba, HS Martín, N Bruneau, M Balanda, C Elgueta, R Fasce, MT Valenzuela, A Orellana, E Ramírez. Reduced neutralization against Delta, Gamma, Mu, and Omicron BA. 1 variants of SARS-CoV-2 from previous non-Omicron infection. Medical Microbiology and Immunology, 1-10. https://doi.org/10.1007/s00430-022-00753-6
Vásquez-Doorman C, Brusa F, Reyes J, Sluys R, Vila-Farré M, Rink JC, Allende ML. 2022. First finds in North and South America of Pentacoelum kazukolinda (Platyhelminthes: Tricladida), a worldwide invasive flatworm. BioInvasions Records 11:1078-1094.
C Moraga, E Sanchez, MG Ferrarini, RA Gutierrez, EA Vidal, MF Sagot. BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data. GigaScience 11. https://doi.org/10.1093/gigascience
Allende ML, Hernández AJ and Romero A. 2022. Aloe vera reduces gut inflammation induced by soybean meal in Atlantic salmon (Salmo salar). Front. Anim. Sci. 3:1028318. doi: 10.3389/fanim.2022.1028318
I Balic, P Olmedo, B Zepeda, B Rojas, T Ejsmentewicz, M Barros, D Aguayo, AA Moreno, R Pedreschi, C Meneses, R Campos-Vargas. Metabolomic and biochemical analysis of mesocarp tissues from table grape berries with contrasting firmness reveals cell wall modifications associated to harvest and cold storage. Food Chemistry 389, 133052. https://doi.org/10.1016/j.foodchem.2022.133052
R Chirinos, K Ramon, M Mendoza, A Figueroa-Merma, A Pacheco-Ávalos, D Campos, R Pedreschi. Effect of Prolonged Cold Storage on the Dynamics of the Enzymatic and Non-Enzymatic Antioxidant System in the Mesocarp of Avocado (Persea americana) cv Hass: Relationship with Oxidative Processes. Horticulturae 8 (10), 880. https://doi.org/10.3390/horticulturae8100880
Chirinos, R; Villasante-Bravo, N; Aguilar-Gálvez, A; Figueroa-Merma, A; Carpentier, S; Pedreschi, R; Campos, D. Antioxidant, antihypertensive and antidiabetic potential of peptidic fractions obtained from tarwi (Lupinus mutabilis) protein hydrolysate and identification of promising multifunctional bioactive peptides. International Journal of Food Science and Technology, 57, 11, 7402-7411. https://doi.org/10.1111/ijfs.16100
C Bolatto, S Nieves, A Reyes, S Olivera-Bravo, V Cambiazo. Patched-Related Is Required for Proper Development of Embryonic Drosophila Nervous System. Frontiers in Neuroscience 16. https://doi.org/10.3389/fnins.2022.920670
A Aguilar-Galvez, D García-Ríos, J Lindo, D Ramírez-Guzmán, R Chirinos, R Pedreschi, D Campos. Impact of cold storage followed by drying of mashua tuber (Tropaeolum tuberosum) on the glucosinolate content and their transformation products. International Journal of Food Science & Technology, 57, 12, 7797-7805. https://doi.org/10.1111/ijfs.16088
VC Trevine, FG Grazziotin, A Giraudo, N Sallaberry-Pinchera, JA Vianna, H Zaher. The systematics of Tachymenini (Serpentes, Dipsadidae) an updated classification based on molecular and morphological evidence. Zoologica Scripta, 51, 643–663. doi: 10.1111/zsc.12565
Levicán, G.P., Muñoz-Villagrán, C., Grossolli-Gálvez, J., Acevedo-Arbunic, J., Vaelnzuela, X., Ferrer A., Díez, B. Characterization of two novel psychrotolerant Acidithiobacillus ferrooxidans strains from polar and subpolar environments. Frontiers in Microbiology, 13:960324. doi: https://doi.org/10.3389/fmicb.2022.960324
V de Ferran, H Vieira Figueiro´, F de Jesus Trindade, O Smith, MHS Sinding, CS Trinca, G Zenato Lazzari, G Veron, JA Vianna, F Barbanera, S Kliver, N Serdyukova, T Bulyonkova, OA Ryder, MTP. Gilbert, KP Koepfli, E Eizirik. Phylogenomics of the world’s otters. Current Biology, 32 (16), 3650-3658.e4. https://doi.org/10.1016/j.cub.2022.06.036
M Seeger, RJ Turner, M González. An exploration of microbial response to stressors with Prof. Claudio C. Vásquez Guzmán Biological Research 55 (1), 1-4. https://doi.org/10.1186/s40659-022-00393-3
Constanza Vásquez-Doorman, Javiera Escobedo, Miguel L. Allende. Current state of knowledge on freshwater planarians (Platyhelminthes, Tricladida, Dugesiidae) from Chile. Neotropical Biology and Conservation, 17 (3). doi: 10.3897/neotropical.17.e82779
VG Uarrota, R Pedreschi. Mathematical modelling of Hass avocado firmness by using destructive and non-destructive devices at different maturity stages and under two storage conditions. Folia Horticulturae, 34(2): 1–12. https://doi.org/10.2478/fhort-2022-0011
P Aguila-Torres, M González, JE Maldonado, R Miranda, L Zhang, R González-Stegmaier, L A Rojas, A Gaete. Associations between bacterial communities and microplastics from surface seawater of the Northern Patagonian area of Chile. Environmental Pollution 306, 119313. https://doi.org/10.1016/j.envpol.2022.119313
M Cisneros-Yupanqui, R Pedreschi, A Aguilar-Galvez, R Chirinos, D Campos. Fractionation and separation of peptides with antioxidant and angiotensin-i converting enzyme inhibitory activities from a quinoa (Chenopodium quinoa Willd.) protein hydrolysate. Journal of microbiology, biotechnology and food sciences 12 (1), e2686-e2686. https://doi.org/10.55251/jmbfs.2686
S Donoso, L Jin, A Maass, Y Qiao. Directional mean dimension and continuum-wise expansive ℤ^{𝕜}-actions. Proceedings of the American Mathematical Society 150 (11), 4841–4853. https://doi.org/10.1090/proc/16027
Arroyo J.I., Díez B, Kempes C.P., West G.B., Marquet, P.A. A general theory for temperature-dependence in biology. Proceedings of the National Academy of Sciences. 119 (30): e2119872119. https://doi.org/10.1073/pnas.2119872119
D Olivares, M García-Rojas, PA Ulloa, A Riveros, R Pedreschi, R Campos-Vargas, C Meneses, B G Defilippi. Response Mechanisms of “Hass” Avocado to Sequential 1–methylcyclopropene Applications at Different Maturity Stages during Cold Storage. Plants 11 (13), 1781. https://doi.org/10.3390/plants11131781
B Espinoza, A Maass. On the automorphism group of minimal S-adic subshifts of finite alphabet rank. Ergodic Theory and Dynamical Systems 42 (9), 2800-282. DOI: https://doi.org/10.1017/etds.2021.64
R Pedreschi, E Ponce, I Hernández, C Fuentealba, A Urbina, JJ González-Fernández, JI Hormaza, D Campos, R Chirinos, En Aguayo. Short vs. long-distance avocado supply chains: life cycle assessment impact associated to transport and effect of fruit origin and supply conditions chain on primary and secondary metabolites. Foods 11 (12), 1807. https://doi.org/10.3390/foods11121807
H Temple, P Phyo, W Yang, JJ Lyczakowski, A Echevarría-Poza, I Yakunin, J P Parra-Rojas, O M Terrett, S Saez-Aguayo, R Dupree, A Orellana, M Hong, P Dupree. Golgi-localized putative S-adenosyl methionine transporters required for plant cell wall polysaccharide methylation. Nature Plants, 1-14. https://doi.org/10.1038/s41477-022-01156-4
R Álvarez-Varas, C Medrano, HA Benítez, F Guerrero, F León Miranda, JA Vianna, C González, D Véliz. Genetics, Morphometrics and Health Characterization of Green Turtle Foraging Grounds in Mainland and Insular Chile. Animals, 12 (12) doi: 10.3390/ani12121473
Alcamán-Arias, M.E.; Cifuentes-Anticevic, J.; Castillo-Inaipil, W.; Farías, L.; Sanhueza, C.; Fernández-Gómez, B.; Verdugo, J.; Abarzua, L.; Ridley, C.; Tamayo-Leiva, J.; Díez, B. Dark diazotrophy during the Late Summer in SurfaceWaters of Chile Bay, West Antarctic Peninsula. Microorganisms. 10:1140. https://doi.org/10.3390/microorganisms10061140
A Gaete, C Andreani-Gerard, JE Maldonado, PA Muñoz-Torres, G F Sepúlveda-Chavera, M González. Bioprospecting of Plant Growth-Promoting Traits of Pseudomonas sp. Strain C3 Isolated from the Atacama Desert: Molecular and Culture-Based Analysis. Diversity 14 (5), 388. https://doi.org/10.3390/d14050388
L Lamig, S Moreno, JM Álvarez, RA Gutiérrez. Molecular mechanisms underlying nitrate responses in plants. Current Biology 32 (9), R433-R439. https://doi.org/10.1016/j.cub.2022.03.022
Di Cataldo, S., Cevidanes, A., Ulloa-Contreras, C., Cabello, J., Gambino, DeliaeGargano, V., Hidalgo-HermosoEzequiel, LatrofaMaria Stefania, Napolitano, C., Sacristán, I., Sallaberry-Pincheira, N., Vianna, J., Acosta-Jamett, G., Vicari D., Otranto, D., Millán, J. 2022. Large-scale survey for canine vector-borne parasites in free-ranging dogs and foxes from six diverse bioclimatic regions of Chile. Veterinary Parasitology: Regional Studies and Reports. VPRSR-D-21-00327R1. DOI: 10.1016/j.vprsr.2022.100721
C Fuentealba, J Vidal, C Zulueta, E Ponce, V Uarrota, BG Defilippi, R Pedreschi. Controlled Atmosphere Storage Alleviates Hass Avocado Black Spot Disorder. Horticulturae 8 (5), 369. https://doi.org/10.3390/horticulturae8050369
CP Beyer, C Barrientos-Sanhueza, E Ponce, R Pedreschi, IF Cuneo, J E Alvaro. Differential Hydraulic Properties and Primary Metabolism in Fine Root of Avocado Trees Rootstocks. Plants 11 (8), 1059. https://doi.org/10.3390/plants11081059
JB. Ramond, K. Jordaan, B. Díez, SM. Heinzelmann, DA. Cowan. Microbial biogeochemical cycling of nitrogen in arid ecosystems. Microbiology and Molecular Biology Reviews. E00109-21. https://doi.org/10.1128/mmbr.00109-21
Alcamán-Arias ME, Cifuentes-Anticevic J, Díez B, Testa G, Troncoso M, Bello E, Farías L. Surface Ammonia- Oxidizer Abundance During the Late Summer in the West Antarctic Coastal System. Frontiers Microbiology. 13:821902. doi: https://doi.org/10.3389/fmicb.2022.821902
G Nuñez-Lillo, E Ponce, JE Alvaro, D Campos, C Meneses, R Campos-Vargas, S Carpentier, C Fuentealba, R Pedresci. Proteomics analysis reveals new insights into surface pitting of sweet cherry cultivars displaying contrasting susceptibility. The Journal of Horticultural Science and Biotechnology, 1-11. https://doi.org/10.1080/14620316.2022.2056088
T Dussarrat, S Prigent, C Latorre, S Bernillon, A Flandin, FP Díaz, C Cassan, P Van Delft, D Jacob, K Varala, J Joubes, Y Gibon, D Rolin, RA Gutiérrez, P Pétriacq. Predictive metabolomics of multiple Atacama plant species unveils a core set of generic metabolites for extreme climate resilience. New Phytologist 234 (5), 1614-1628. https://doi.org/10.1111/nph.18095
JE Maldonado, A Gaete, D Mandakovic, C Aguado‐Norese, M Aguilar, RA Gutiérrez, M González. Partners to survive: Hoffmannseggia doellii root‐associated microbiome at the Atacama Desert. New Phytologist 234, 2126–2139. doi: https://doi.org/10.1111/nph.18080
Daly Noll, Fabiola Leon, Debora Brandt, Pierre Pistorius, Céline Le Bohec, Francesco Bonadonna, Phil N. Trathan, Andrés Barbosa, Andrea Raya-Rey, Gisele P.M. Dantas, Rauri C.K. Bowie, Elie Poulin, Juliana A. Vianna. 2022. Positive selection on mitogenomes driving the diversification of gentoo penguins in response to adaptation in isolation. Scientific Reports, 12, 3767. doi.org/10.1038/s41598-022-07562-0
LM De Almeida, S Cortes, M Vilensky, O Valenzuela, L Cortes-Sanabria, M de Souza, R A Barbeito, E Abdelhay, N Artagaveytia, A Daneri-Navarro, A S Llera, B Müller, O L Podhajcer, C Velazquez, E Alcoba, I Alonso, A I Bravo, N Camejo, D M Carraro, M Castro, S Cataldi, A Cayota, M Cerda, A Colombo, S Crocamo, A Del Toro-Arreola, R Delgadillo-Cristerna, L Delgado, M Dreyer Breitenbach, E Fernández, J Fernández, W Fernández, R A Franco-Topete, F Gaete, J Gómez, L P Gonzalez-Ramirez, M Guerrero, S A Gutierrez-Rubio, B Jalfin, A Lopez-Vazquez, D Loria, S Míguez, A de J Moran-Mendoza, G Morgan-Villela, C Mussetti, M A Nagai, A Oceguera-Villanueva, R M Reis, J Retamales, R Rodriguez, C Rosales, E Salas-Gonzalez, L Segovia, J M Sendoya, A A Silva-Garcia, S Viña, L Zagame, B Jones, M Szklo, United States-Latin American Cancer Research. Socioeconomic, Clinical, and Molecular Features of Breast Cancer Influence Overall Survival of Latin American Women. Frontiers in Oncology, 12:845527. DOI: 10.3389/fonc.2022.845527
B Battistoni, J Salazar, W Vega, D Valderrama-Soto, P Jiménez-Muñoz, A Sepúlveda-González, S Ahumada, I Cho, C S Gardana, H Morales, Á Peña-Neira, H Silva, J Maldonado, M González, R Infante, I Pacheco. An Upgraded, Highly Saturated Linkage Map of Japanese Plum (Prunus salicina Lindl.), and Identification of a New Major Locus Controlling the Flavan-3-ol Composition in Fruits. Frontiers in Plant Science 13, 805744. doi: 10.3389/fpls.2022.805744
AE Marcoleta, P Arros, MA Varasa, J Costa, J Rojas-Salgado, C Berríos-Pastén, S Tapia-Fuentes, D Silva, J Fierro, N Canales, FP Chávez, A Gaete, M González, ML Allende, R Lagos. The highly diverse Antarctic Peninsula soil microbiota as a source of novel resistance genes. Science of The Total Environment, 810. doi:10.1016/j.scitotenv.2021.152003
I Hernández, V Uarrota, C Fuentealba, D Paredes, BG Defilippi, R Campos-Vargas, G Nuñez, Esther Carrera, C Meneses, M Hertog, R Pedreschi. Transcriptome and hormone analyses reveals differences in physiological age of ′Hass′ avocado fruit. Postharvest Biology and Technology 185, 111806. https://doi.org/10.1016/j.postharvbio.2021.111806
F Pedreschi, J Matus, A Bunger, R Pedreschi, NL Huamán-Castilla, MS Mariotti-Celis. Effect of the Integrated Addition of a Red Tara Pods (Caesalpinia spinosa) Extract and NaCl over the neo-formed contaminants content and sensory properties of crackers. Molecules 27 (3), 1020. https://doi.org/10.3390/molecules27031020
O Contreras-López, EA Vidal, E Riveras, JM Alvarez, TC Moyano, EE Sparks, J Medina, A Pasquino, PN Benfey, GM Coruzzi, RA Gutiérrez. Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate. Proceedings of the National Academy of Sciences 119 (4), e2107879119. https://doi.org/10.1073/pnas.2107879119
P BlázquezSánchez, F Engelberger, J CifuentesAnticevic, C Sonnendecker, A Griñén, J Reyes, B Díez, V Guixé, K Richter, W Zimmermann, CA Ramírez-Sarmiento. Antarctic polyester hydrolases degrade aliphatic and aromatic polyesters at moderate temperatures. Applied Environmental Microbiology, 88(1), e01842-21. https://doi.org/10.1128/AEM.01842-21
D Campos, D García‐Ríos, A Aguilar‐Galvez, R Chirinos, R Pedreschi. Comparison of conventional and ultrasound‐assisted extractions of polyphenols from Inca muña (Clinopodium bolivianum) and their characterization using UPLC–PDA‐ESI –Q/TOF–MSn technique. Journal of Food Processing and Preservation 46 (3), e16310. https://doi.org/10.1111/jfpp.16310
A Di Genova, G Nardocci, R Maldonado-Agurto, C Hodar, C Valdivieso, P Morales, F Gajardo, R Marina, RA Gutiérrez, A Orellana, V Cambiazo, M González, A Glavic, MAMéndez, A Maass, ML Allende, MA Montecino. Genome sequencing and transcriptomic analysis of the Andean killifish Orestias ascotanensis reveals adaptation to high-altitude aquatic life. Genomics, 114 (1). doi: 10.1016/j.ygeno.2021.12.018
Fiddaman SR, Vinkler M, Levy H, Dimopoulos EA, Vianna JA, Cole TL, Pan H, Fang M, Zhang G, Frantz LA, Hart T, Smith AL. 2022. Positive selection and an incipient, genus-wide pseudogenization event in penguin Toll-like receptors. Molecular Biology and Evolution. doi: 10.1093/molbev/msab3 mm
Nicolás Lagos, Rodrigo Villalobos, Juliana A. Vianna, Cayetano Espinosa-Miranda, Agustín Iriarte, Jaime R. Rau. The spatial and trophic ecology of culpeo foxes (Lycalopex culpaeus) in the high Andes of northern Chile. Studies on Neotropical Fauna and Environment. doi:10.1080/01650521.2021.2005393
Rojas, B; Súarez, F; Saez-Aguayo, S; Olmedo, P; Zepeda, Delgado-Rioseco, J; Defilippi, B; Pedreschi, R; Meneses, C; Pérez-Donoso, A; Campos-Vargas, R. Pre-anthesis cytokinin applications increase table grape berries firmness by modulating cell wall polysaccharides. Plants, 10, 2642. 10.3390/plants10122642
Sergio Guajardo-Leiva, Fernando Santos, Oscar Salgado, Christophe Regeard, Laurent Quillet, Beatriz Díez. Unveiling Ecological and Genetic Novelty within Lytic and Lysogenic Viral Communities of Hot Spring Phototrophic Microbial Mats. Microbiology Spectrum, 9(3), e00694-21. DOI: https://doi.org/10.112
Sree Rohit Raj Kolora, Gregory L. Owens, Alexander Stubbs, Kamalakar Chatla, Connor Jainese, Katelin Seeto, Merit McCrea, Juliana A. Vianna, Doris Bachtrog, Katherine Maslenikov, James Orr, Milton Love, Peter H. Sudmant. Origins and evolution of extreme lifespan in the adaptive radiation of Pacific rockfishes. Science. 374 (6569), 842-847. DOI: 10.1126/science.abg5332
Chirinos, R; Campos, D; Martínez, S; Llanos, S; Betallaluz-Pallardel, I; García-Ríos, D; Pedreschi, R. The Effect of Hydrothermal Treatment on Metabolite Composition of Hass Avocados Stored in a Controlled Atmosphere. Plants, 10(11), 2427. 10.3390/plants10112427
Núñez-Lillo, G; Ulloa-Zepeda, L; Pavez, C; Riveros, A; Campos-Vargas, R; Pedreschi, R; Meneses, C. Unravelling the molecular regulation mechanisms of slow ripening fruit in Prunus persica. Plants, 10 (11), 2380. 10.3390/plants10112380
Gil Eshel, Viviana Araus, Soledad Undurraga, Daniela C. Soto, Carol Moraga, Alejandro Montecinos, Tomás Moyano, Jonathan Maldonado, Francisca P. Díaz, Kranthi Varala, Chase W. Nelson, Orlando Contreras-López, Henrietta Pal-Gabor, Tatiana Kraiser, Gabriela Carrasco-Puga, Ricardo Nilo-Poyanco, Charles M. Zegar, Ariel Orellana, Martín Montecino, Alejandro Maass, Miguel L. Allende, Robert DeSalle, Dennis W. Stevenson, Mauricio González, Claudio Latorre, Gloria M. Coruzzi and Rodrigo A. Gutiérrez. Plant ecological genomics at the limits of life in the Atacama Desert. Proceedings of the National Academy of Sciences (PNAS), 118 (46). https://doi.org/10.1073/pnas.2101177118
Gálvez, L; Rios-Gonzales, B; Ramírez-Pinto, M; Fuentealba, C; Pedreschi, R; Shetty, K. Phenolic metabolite analysis, in vitro health-relevant bioactivity and physical characteristics of purple corn (Zea mays L.) grown at two Andean geographical locations. Metabolites, 11, 722.
Paulina García-González, Fabián Tempio, Camila Fuentes, Consuelo Merino, Leonardo Vargas, Valeska Simon, Mirliana Ramirez-Pereira, Verónica Rojas, Eduardo Tobar, Glauben Landskron, Juan Pablo Araya, Mariela Navarrete, Carla Bastias, Rocío Tordecilla, Macarena A. Varas, Pablo Maturana, Andrés E. Marcoleta, Miguel L. Allende, Rodrigo Naves, Marcela A. Hermoso, Flavio Salazar-Onfray, Mercedes Lopez, María Rosa Bono, and Fabiola Osorio. Dysregulated immune responses in COVID-19 patients correlating with disease severity and invasive oxygen requirements. Frontiers in Immunology, 12. doi: 10.3389/fimmu.2021.769059
J Ortiz-Severín, CJ Stuardo, NE Jiménez, R Palma, MP Cortés, J Maldonado, A Maass, V Cambiazo. Nutrient Scarcity in a New Defined Medium Reveals Metabolic Resistance to Antibiotics in the Fish Pathogen Piscirickettsia salmonis. Frontiers in Microbiology 12, 734239. doi: 10.3389/fmicb.2021.734239
Weinberger C, Vianna JA, Faugeron S, Marquet P. Inferring the impact of past climate changes and hunting on the South American sea lion. Diversity and Distributions, 27(12), 2479-2497. https://doi.org/10.1111/ddi.13421
Doussang D, Sallaberry-Pincheira N, Cabanne GS, Lijtmaer DA, González-Acuña D, Vianna JA. Specialist versus generalists parasites: the interaction between host diversity, environment and geographic barriers in avian malaria. International Journal for Parasitology, 51(11), 899-911. https://doi.org/10.1016/j.ijpara.2021.04.003
Adrián González-Martín, Tomás Moyano, Daniela A. Gutiérrez, Franciso J. Carvajal, Waldo Cerpa, Jonathan G. Hanley, Rodrigo A. Gutiérrez, Alejandra R. Álvarez. c-Abl regulates a synaptic plasticity-related transcriptional program involved in memory and learning. Progress in Neurobiology, 205, 102122. 10.1016/j.pneurobio.2021.102122
Frugone MJ, Cole TL, López ME, Clucas G, Matos-Maraví P, Lois NA, Pistorius P, Bonadonna F, Trathan P, Polanowski A, Wienecke B, Raya-Rey A, Pütz K, Steinfurth A, Bi K, Y. Wang-Claypool C, Bowie RCK, Waters JM, Poulin E, Vianna JA. Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation. Diversity and Distribution, 27(11), 2277-2296. https://doi.org/10.1111/ddi.13399
Sophia Di Cataldo, Aitor Cevidanes, Dr; Claudia Ulloa-Contreras; Irene Sacristán; Ezequiel Hidalgo-Hermoso; Valeria Gargano; Nicole Sallaberry-Pincheira; Diego Peñaloza-Madrid; Daniel González-Acuña; Constanza Napolitano; Juliana Vianna; Gerardo Acosta-Jamett; Domenico Vicari; Javier Millán. Mapping the distribution and risk factors of Anaplasmataceae in wild and domestic canines in Chile using molecular and serological methods. Ticks and Tick-borne Diseases. 2021, 12(5):101752. DOI: 10.1016/j.ttbdis.2021.101752
Pizarro, E., Mora, M., Medina-Vogel, G., Vianna JA. Surviving despite reduce MHC variation: selection patterns and genetic variation of the endangered Huillín (Lontra provocax). Mammal Research 66(4). https://doi.org/10.1007/s13364-021-00594-3
Lindh, V; Uarrota, V; Zulueta, C; Alvaro, JE; Valndenegro, M; Cuneo, I; Mery, D; Pedreschi, R. Image analysis reveals that lenticel damage does not result in black spot development but enhances dehydration in Persea americana Mill cv. Hass during prolonged storage. Agronomy, 11, 1699.
Jerónimo Cifuentes-Anticevic, María E. Alcamán-Arias, Tomás Alarcón-Schumacher, Javier Tamayo-Leiva, Carlos Pedrós-Alió, Laura Farías, Beatriz Díez. Proteorhodopsin phototrophy in Antarctic coastal waters. mSphere. https://doi.org/10.1128/mSphere.00525-21
Alarcón-Schumacher T, Guajardo-Leiva S, Martinez-Garcia M, Díez B. Ecogenomics and adaptation strategies of Southern Ocean viral communities. mSystems 6:e00396-21. DOI: https://doi.org/10.1128/mSystems.00396-21
Andrea Vega, Isabel Fredes, José O’Brien, Zhouxin Shen, Krisztina Ötvös, Rashed Abualia, Eva Benkova, Steven P Briggs, Rodrigo A Gutiérrez. Nitrate triggered phosphoproteome changes and a PIN2 phosphosite modulating root system architecture. EMBO Reports, 22 (9), e51813. doi.org/10.15252/embr.202051813
Huamán-Alvino, C; Chirinos, R; Gonzales-Parinova, F; Pedreschi, R; Campos, D. Physicochemical and bioactive compounds at edible ripeness of eleven varieties of avocado (Persea americana) cultivated in the Andean Region of Peru. International Journal of Food Science & Technology, 56, 5040-5049.
Paredes-Zuniga Susana, Ormeno Fernando, Allende, Miguel L. Triadimefon triggers circling behavior and conditioned place preference/ aversion in zebrafish in a dose dependent manner. Neurotoxicology and Teratology, 86. doi: 10.1016/j.ntt.2021.106979
Klemens Pütz, Camila Gherardi-Fuentes, Pablo García-Borboroglu, Claudia Godoy, Marco Flagg, Julieta Pedrana, Juliana Vianna, Alejandro Simeone, Benno Lüthi. Exceptional Foraging Plasticity In King Penguins (Aptenodytes patagonicus) From a Recently Established Breeding Site In Tierra Del Fuego, Chile. Global Ecology and Conservation, 28, e01669. https://doi.org/10.1016/j.gecco.2021.e01669
P Aguila-Torres, M González, JE Maldonado, RM Miranda, L Zhang R González-Stegmaier, LA Rojas, A Gaete. Associations between bacterial communities and microplastics from surface seawater of the Northern Patagonian area of Chile. Environmental Pollution, 1 (306), 119313. doi: 10.1016/j.envpol.2022.119313
Javier Ignacio Tamayo-Leiva, Jerónimo Cifuentes-Anticevic, Pilar Aparicio Rizzo, José Ignacio Arroyo, Italo Masotti, Beatriz Díez. Influence of estuarine water on the microbial community structure of Patagonian fjords. Frontiers in Marine Science. DOI: 10.3389/fmars.2021.611981
Andrés Ortíz-Ardila, Beatriz Díez, Crispín Celis, Pavel Jenicek, Rodrigo A Labatut. Microaerobic conditions in anaerobic sludge promote changes in bacterial composition favouring biodegradation of polymeric siloxanes. Environmental science: Processes and Impacts. https://doi.org/10.1039/D1EM00143D
A Gaete, R Pulgar, C Hodar, J Maldonado, L Pavez, D Zamorano, C Pastenes, M González, N Franck, D Mandakovic. Tomato cultivars with variable tolerances to water deficit differentially modulate the composition and interaction patterns of their rhizosphere microbial communities. Frontiers in Plant Science 12, 688533. 10.3389/fpls.2021.688533
D Valderrama-Soto, J Salazar, A Sepúlveda-González, C Silva-Andrade, C Gardana, H Morales, B Battistoni, P Jiménez-Muñoz, M González, A Peña-Neira, R Infante, I Pacheco. Detection of quantitative trait loci controlling the content of phenolic compounds in an asian plum (Prunus salicina L.) F1 population. Frontiers in Plant Science, 1331. https://doi.org/10.3389/fpls.2021.679059
Rocío Álvarez-Varas, Noemi Rojas-Hernández, Maike Heidemeyer, Cynthia Riginos, Hugo A. Benítez, Raúl Araya-Donoso, Eduardo Reséndiz, Mónica Lara-Uc, Daniel A. Godoy, Juan Pablo Muñoz-Pérez, Daniela E. Alarcón-Ruales, Joanna Alfaro-Shigueto, Clara Ortiz-Alvarez, Jeffrey C. Mangel, Juliana A. Vianna and David Véliz. Green, yellow or black? Genetic differentiation and adaptation signatures in a highly migratory marine turtle. Proceedings of the Royal Society B, 288 (1954). https://doi.org/10.1098/rspb.2021.0754
T Dussarrat, G Decros, FP Díaz, Y Gibon, C Latorre, D Rolin, RA Gutiérrez, Pierre Pétriacq. Another tale from the harsh world: How plants adapt to extreme environments. Annual Plant Reviews Online, 551-603.
E Barozet, CY Valenzuela, L Cifuentes, RA Verdugo, L Herrera, M Acuña, E Llop, M Moraga, S Berríos, A Di Genova, D Digman, A Symon, S Asenjo, P López, ML Bustamante, P Pezo-Valderrama, J Suazo, F Caba, M Villalón, S Alvarado, D Cáceres, K Salgado, P Portales, N Loira, A Maass. The Chilean socio-ethno-genomic cline. Biodemography and Social Biology 66 (2), 156-171. doi.org/10.1080/19485565.2021.1879626
Olivera, M; Delgado, N; Cádiz, F; Riquelme, N; Montenegro, I; Seeger, M; Bravo, G; Barros, W; Pedreschi, R; Besoain, X. Diffusible compounds produced by Hanseniaspora osmophila and Gluconobacter cerinus help to control the causal agents of gray rot and summer bunch rot of table grapes. Antibiotics, 10, 664.
Delgado, N; Olivera, M; Cádiz, F; Bravo, G; Montenegro, I; Madrid, A; Fuentealba, C; Pedreschi, R; Salgado, E; Besoain, X. Volatile Organic Compounds (VOCs) produced by Gluconobacter cerinus and Hanseniaspora osmophila displaying control effect against table grape-rot pathogens. Antibiotics, 10, 663.
S Ruffel, V Chaput, J Przybyla-Toscano, I Fayos, C Ibarra, T Moyano, C Fizames, P Tillard, JA O’Brien, RA Gutiérrez, A Gojon, L Lejay. Genome-wide analysis in response to nitrogen and carbon identifies regulators for root AtNRT2 transporters. Plant Physiology, 186 (1), 696-714. https://doi.org/10.1093/plphys/kiab047
Ponce, E; Alzola, B; Cáceres, N; Gas, M; Ferreira, C; Vidal, J; Chirinos, R; Campos, D; Rubilar, M; Campos-Vargas, C; Pedreschi, R; Fuentealba, C. Biochemical and phenotypic characterization of sweet cherry (Prunus avium L) cultivars with induced surface pitting. Postharvest Biology & Technology, 175, 111494.
F Tobar, F Bravo-Marquez, J Dunstan, J Fontbona, A Maass, D Remenik, JF Silva. Data Science for Engineers: A Teaching Ecosystem. IEEE Signal Processing Magazine 38 (3), 144-153. DOI: 10.1109/MSP.2021.3053551
Sophia Di Cataldo, Aitor Cevidanes, Claudia Ulloa-Contreras, Irene Sacristán, Diego Peñaloza-Madrid, Juliana Vianna, Daniel González-Acuña, Nicole Sallaberry-Pincheira, Javier Cabello, Constanza Napolitano, Ezequiel Hidalgo-Hermoso, Gerardo Acosta-Jamett, Javier Millán. Widespread Infection with Hemotropic Mycoplasmas in Free-Ranging Dogs and Wild Foxes Across Six Bioclimatic Regions of Chile. Microorganisms. 9(5), 919. doi: 10.3390/microorganisms9050919
Fuentealba, C; Ejsmentewicz, T; Campos-Vargas, R; Saa, S; Aliaga, O; Chirinos, R; Campos, D; Pedreschi, R. Cell wall and metabolite composition of sweet cherry fruits from two cultivars with contrasting susceptibility to surface pitting during storage. Food Chemistry, 342, 128307.
Susana Saez Aguayo, Juan Pablo Parra-Rojas, Pablo Sepúlveda-Orellana, Jonathan Celiz-Balboa, Verónica Arenas-Morales, Christine Salle, Hernán Salinas-Grenet, Asier Largo-Gosens, HM North, Marie-Christine Ralet, Ariel Orellana. Transport of UDP-Rhamnose by URGT2, URGT4 and URGT6 modulates Rhamnogalacturonan-I length. Plant Physiology, 185 (3), 914–933. DOI : 10.1093/plphys/kiaa070
Aguilar-Galvez, A; García-Ríos, D; Janampa, C; Mejía, C; Chirinos, R; Pedreschi, R; Campos, D. Metabolites, volatile compounds and in vitro functional properties during growth and commercial harvest of Peruvian lucuma (Pouteria lucuma). Food Bioscience, 40, 100882.
Hernández, I; Uarrota, V; Paredes, D; Fuentealba, C; Defilippi, B; Campos-Vargas, R; Meneses, C; Hertog, M; Pedreschi, R. Can metabolites at harvest be used as physiological markers for modelling the softening behaviour of Chilean Hass avocados destined to local and distant markets? Postharvest Biology & Technology, 174, 111457.
Chirinos, R; Cerna, M; Pedreschi, R; Calsin, M; Aguilar-Galvez, A; Campos, D. Multifunctional in vitro bioactive properties: antioxidant, antidiabetic and antihypertensive of protein hydrolyzates from Tarwi (Lupinus mutabilis Sweet) obtained by enzymatic biotransformation. Cereal Chemistry, 98, 423-433.
Gonzalez D, Allende ML. Current advances in comprehending dynamics of regenerating axons and axon–glia interactions after peripheral nerve injury in zebrafish. International Journal of Molecular Sciences 22 (5), 2484. https://doi.org/10.3390/ijms22052484
C Coluccio Leskow, M Conte, T Del Pozo, L Bermúdez, BS Lira, G Gramegna, I Baroli, E Burgos, D Zavallo, L Kamenetzky, R Asís, M Gonzalez, AR Fernie, M Rossi, S Osorio, F Carrari. The cytosolic invertase NI6 affects vegetative growth, flowering, fruit set, and yield in tomato. Journal of Experimental Botany 72 (7), 2525-2543. https://doi.org/10.1093/jxb/eraa594
S Donoso, F Durand, A Maass, S Petite. Interplay between finite topological rank minimal Cantor systems, 𝒮-adic subshifts and their complexity. Transactions of the American Mathematical Society 374 (5), 3453-3489. https://doi.org/10.1090/tran/8315
Beyer, C; Cuneo, I; Alvaro, J.E; Pedreschi, R. Evaluation of aerial and root plant growth behavior, water and nutrient use efficiency and carbohydrate dynamics for Hass avocado grown in a soilless and protected growing system. Scientia Horticulturae, 277, 109830.
Alvarez-Varas R, Heidemeyer M, Riginos C, Benitez H, Reséndiz E, Lara-Uc M, Godoy D, Muñoz-Pérez J, Alarcón-Ruales D, Vélez-Rubio G, Fallabrino A, Piovano S, Alfaro-Shigueto J, Ortiz-Álvarez C, Mangel J, Esquerre D, Zárate P, Medrano C, Vianna JA, Veliz D. Integrating morphological and genetic data at different spatial scales in a cosmopolitan marine turtle species: challenges for management and conservation. Zoological Journal of Linnean Society. 191(2), 434–453. https://doi.org/10.1093/zoolinnean/zlaa066
A Herrera-Vásquez, A Fonseca, JM Ugalde, L Lamig, A Seguel, TC Moyano, RA Gutiérrez, P Salinas, EA Vidal, L Holuigue. TGA class II transcription factors are essential to restrict oxidative stress in response to UV-B stress in Arabidopsis. Journal of Experimental Botany 72 (5), 1891-1905. https://doi.org/10.1093/jxb/eraa534
Claudio Olmos, Gonzalo Campaña, Victor Monreal, Paola Pidal, Nannet Sanchez, Constanza Airola, Dayan Sanhueza, Patricio Tapia, Ana María Muñoz, Felipe Corvalan, Sebastian Hurtado, Claudio Meneses, Ariel Orellana, Martin Montecino, Gloria Arriagada, Fernando Jose Bustos. SARS-CoV-2 infection in asymptomatic healthcare workers at a clinic in Chile. PLoS One 16 (1), e0245913. https://doi.org/10.1371/journal.pone.0245913
Mejía-Aguila, R; Aguilar-Gálvez, A; Chirinos, R; Pedreschi, R; Campos, D. Vacuum impregnation of apple slices with Yacon (Smallanthus sonchifolius Poepp & Endl) fructooligosaccharides to enhance the functional properties of the fruit snack. International Journal of Food Science and Technology, 56, 392-401.
Covarrubias, M.P; Lillo-Carmona, V; Melet, L; Benedetto, G; Andrade, D; Maucourt, M; Deborde, C; Fuentealba, C; Moing, A; Valenzuela, M.L; Pedreschi, R; Miyasaka Almeida, A. Primary metabolite fruit profile is altered in response to source-sink imbalance and can be used as early predictor in nectarine. Frontiers in Plant Science, 11, 604133.
Krisztina Ötvös, Marco Marconi, Andrea Vega, Jose O’Brien, Alexander Johnson, Rashed Abualia, Livio Antonielli, Juan Carlos Montesinos, Yuzhou Zhang, Shutang Tan, Candela Cuesta, Christina Artner, Eleonore Bouguyon, Alain Gojon, Jirí Friml, Rodrigo A Gutiérrez, Krzysztof Wabnik, Eva Benková. Modulation of plant root growth by nitrogen source‐defined regulation of polar auxin transport. The EMBO Journal 40 (3), e106862. https://doi.org/10.15252/embj.2020106862
Acosta I, Cabanne GS, Noll D, González-Acuña D, Pliscoff P, Vianna JA. Patagonian glacial effects on the endemic Green-backed Firecrown, Sephanoides sephaniodes (Ave: Trochilidae): evidences from species distribution models and molecular data. Journal of Ornithology. 162, 289–301. https://doi.org/10.1007/s10336-020-01822-4
Lidia M Zúñiga, Juan-Carlos Andrade, Francisca Fábrega-Guerén, Pedro A Orihuela, Ethel V Velásquez, Elena A Vidal, Rodrigo A Gutiérrez, Patricio Morales, Benito Gómez-Silva, Horacio B Croxatto. Mating induces early transcriptional response in the rat endosalpinx: the role of TNF and RA. Reproduction 161 (1), 43-59. https://doi.org/10.1530/REP-20-0190
G Carrasco‐Puga, FP Díaz, DC Soto, C Hernández‐Castro, O Contreras‐López, A Maldonado, C Latorre, RA Gutiérrez. Revealing hidden plant diversity in arid environments. Ecography 44 (1), 98-111. https://doi.org/10.1111/ecog.05100
BOOKS
Orellana, A. (2021). Membrane transport | Nucleotide sugar transporters. In Encyclopedia of Biological Chemistry: Third Edition (Vol. 2, pp. 1070-1072). Elsevier. https://doi.org/10.1016/B978-0-12-819460-7.00266-8
Moyano, T.C., Gutiérrez, R.A., Alvarez, J.M. Genomic Footprinting Analyses from DNase-seq Data to Construct Gene Regulatory Networks. In: MUKHTAR, S. (eds) Modeling Transcriptional Regulation. Methods in Molecular Biology, vol 2328. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1534-8_3
J Celiz-Balboa, A Largo-Gosens, JP Parra-Rojas, V Arenas-Morales, P Sepulveda-Orellana, H Salinas-Grenet, S Saez-Aguayo, A Orellana. Functional Interchangeability of Nucleotide Sugar Transporters URGT1 and URGT2 Reveals That urgt1 and urgt2 Cell Wall Chemotypes Depend on Their Spatio Temporal Expression. Frontiers in Plant Science 11, 594544. doi.org/10.3389/fpls.2020.594544
Fernando Casares, Miguel Allende, José Félix de Celis, Acaimo Gónzalez-Reyes, Juan Ramón Martínez-Morales. José Luis Gómez-Skarmeta (1966-2020), Obituary. Development, 147 (22): dev197996. https://doi.org/10.1242/dev.197996
J Ortiz-Severín, D Travisany, A Maass, V Cambiazo, FP Chávez. Global proteomic profiling of Piscirickettsia salmonis and salmon macrophage-like cells during intracellular infection. Microorganisms 8 (12), 1845.
Jaime Alcorta, Tomás Alarcón-Schumacher, Oscar Salgado, Beatriz Díez. Taxonomic novelty and distinctive genomic features of hot spring cyanobacteria. Frontiers in Genetics, section Evolutionary and Population Genetics. https://doi.org/10.3389/fgene.568223.
L Guajardo, R Aguilar, FJ Bustos, G Nardocci, RA Gutiérrez, B van Zundert, M Montecino. Downregulation of the polycomb-associated methyltransferase ezh2 during maturation of hippocampal neurons is mediated by microRNAs let-7 and miR-124. International Journal of Molecular Sciences 21 (22), 8472. https://doi.org/10.3390/ijms21228472
Wozniak A, Cerda A, Ibarra-Henríquez C, Rivera M, Armijo G, Sebastian V, Armijo G, Lamig L, Miranda C,Lagos M, Solari S, Guzmán AM,Quiroga T, Hitschfeld S, Riveras E, Ferrés M, Gutiérrez RA, García P. A simple RNA preparation method for SARS-CoV-2 detection by RT-qPCR. Scientific Reports 10(1):16608. 10.1038/s41598-020-73616-w
Sergio Guajardo-Leiva, Jonas Chnaiderman, Aldo Gaggero, Beatriz Díez. Metagenomic insights into the sewage RNA virosphere of a large city. Viruses. 12, 1050; doi:10.3390/v12091050.
JF De la Paz, C Anguita-Salinas, C Díaz-Celis, FP Chávez, Allende ML. The zebrafish perivitelline fluid provides maternally-inherited defensive immunity. Biomolecules 10 (9), 1274.
Vianna JA, Fernandes FAN, Frugone MJ, Figueiró H, Luis R. Pertierra, Daly Noll, Ke Bi, Cynthia Y. Wang-Claypool, Andrew Lowther, Patricia Parker, Celine Le Bohec, Francesco Bonadonna, Barbara Wienecke, Pierre Pistorius, Antje Steinfurth Christopher Burridge, Gisele P. M. Dantas, Elie Poulin, W. Brian Simison, Jim Henderson, Eduardo Eizirik, Mariana F. Nery, Rauri C. K. Bowie. Genome-wide analyses reveal drivers of penguin diversification. Proceedings of the National Academy of Sciences , 117 (36) 22303-22310. https://doi.org/10.1073/pnas.2006659117
A Gaete, D Mandakovic, M González. Isolation and identification of soil bacteria from extreme environments of Chile and their plant beneficial characteristics. Microorganisms, 8(8), 1213. https://doi.org/10.3390/microorganisms8081213
C Muñoz-Espinoza, A Di Genova, A Sánchez, J Correa, A Espinoza, C Meneses, A Maass, A Orellana, P Hinrichsen. Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches. BMC Plant Biology 20 ,365. https://doi.org/10.1186/s12870-020-02564-4
Allende ML. Six decades of scientific pan-Americanism-an interview with Jorge E. Allende. International Journal of Developmental Biology 65 (1-2-3), 93-101.
S Miranda, P Vilches, M Suazo, L Pavez, K García, MA Méndez, M González, LA Meisel, BG Defilippi, T Del Pozo. Melatonin triggers metabolic and gene expression changes leading to improved quality traits of two sweet cherry cultivars during cold storage. Food Chemistry 319, 126360. https://doi.org/10.1016/j.foodchem.126360
J Vásquez‑Dean, F Maza, I Morel, R Pulgar, M González. Microbial communities from arid environments on a global scale. A systematic review. BIological Research, 53:29. https://doi.org/10.1186/s40659-020-00296-1
EA Vidal, JM Alvarez, V Araus, E Riveras, MD Brooks, G Krouk, S Ruffel, L Lejay, NM Crawford, GM Coruzzi, RA Gutiérrez. Nitrate in 2020: thirty years from transport to signaling networks. The Plant Cell 32 (7), 2094-2119.
Chirinos, R; Pedreschi, R; Velásquez-Sánchez, M; Aguilar-Gálvez, A; Campos, D. In vitro antioxidant and angiotensine-I converting enzyme inhibitory properties of enzymatically hydrolyzed quinoa (Chenopodium quinoa) and kiwicha (Amaranthus caudatus) proteins. Cereal Chemistry, 97, 949-957.
D Mandakovic, R Pulgar, J Maldonado, W Mardones, M González, FA Cubillos, V Cambiazo. Fungal diversity analysis of grape musts from central valley-Chile and characterization of potential new starter cultures. Microorganisms 8 (6), 956. https://doi.org/10.3390/microorganisms8060956
S Moreno, J Canales, L Hong, D Robinson, AHK Roeder, RA Gutiérrez. Nitrate defines shoot size through compensatory roles for endoreplication and cell division in Arabidopsis thaliana. Current Biology 30 (11), 1988-2000. e3.
G Covello, FJ Rossello, M Filosi, F Gajardo, AL Duchemin, BF Tremonti, M Eichenlaub, JM Polo, D Powell, J Ngai, Allende ML, E Domenici, M Ramialison, L Poggi. Transcriptome analysis of the zebrafish atoh7−/− Mutant, lakritz, highlights Atoh7‐dependent genetic networks with potential implications for human eye diseases. FASEB BioAdvances 2 (7), 434-448.
Chirinos, R; Pedreschi, R; Campos, D. Enzyme-assisted hidrolysates from sacha inchi (Plukenetia volubilis) protein with in vitro antioxidant and antihypertensive properties. Journal of Food Processing and Preservation, 44(12), e14969.
N Cumplido, Allende ML, G Arratia. From Devo to Evo: patterning, fusion and evolution of the zebrafish terminal vertebra. Frontiers in Zoology 17 (1), 1-17.
García-Ríos, D; Aguilar-Galvez, A; Chirinos, R; Pedreschi, R; Campos, D. Relevant metabolites for the organoleptic and functional properties of two commercial varieties of Peruvian Pouteria lucuma. Journal of Food Processing and Preservation, 44, e14479.
Porras-Mija, I; Chirinos, R; García-Ríos, D; Aguilar-Galvez, A; Huamán-Alvino, C; Pedreschi, R; Campos, D. Physico-chemical characterization, metabolomic profile and in vitro antioxidant, antihypertensive, antiobesity and antidiabetic properties of Andean elderberry (Sambucus nigra L). Journal of Berry Research, 10, 193-208.
Uarrota, V; Hernandez, I; Ponce, Guequen; Vidal, J; Fuentealba, C; Defilippi, B; Lindh, V; Zulueta, C; Chirinos, R; Campos, D; Pedreschi, R. Unraveling factors associated with “Blackspot” disorder in stored Hass avocado (Persea americana Mill) fruit. Journal of Horticultural Science & Biotechnology, 95, 804-815.
Pertierra LR, Segovia NI, Noll D, Martinez PA, Pliscoff P, Barbosa A, Aragón P, Raya Rey A, Pistorius P, Trathan P, Polanowski A, Bonnadonna F, Le Bohec C, Bi K, Wang-Claypool CY, Gonzalez-Acuña D, Dantas GPM, Bowie RCK, Poulin E, Vianna JA. Cryptic speciation in gentoo penguins is driven by geographic isolation and regional marine conditions: unforeseen vulnerabilities to global change. Diversity and distribution. 26(8), 958-975. doi: 10.1111/ddi.13072
P Aguila-Torres, J Maldonado, A Gaete, J Figueroa, A González, R Miranda, R González-Stegmaier, C Martin, M González. Biochemical and genomic characterization of the cypermethrin-degrading and biosurfactant-producing bacterial strains isolated from marine sediments of the Chilean Northern Patagonia. Marine Drugs 18 (5), 252. https://doi.org/10.3390/md18050252
P Aravena, R Pulgar, J Ortiz-Severín, F Maza, A Gaete, S Martínez, E Serón, M González, V Cambiazo. PCR-RFLP Detection and Genogroup Identification of Piscirickettsia salmonis in Field Samples. Pathogens 9 (5), 358.
E Riveras, L Azocar, TC Moyano, M Ocares, H Molina, D Romero, JC Roa, JR Valbuena, RA Gutiérrez, JF Miquel. Transcriptomic profiles reveal differences in zinc metabolism, inflammation, and tight junction proteins in duodenum from cholesterol gallstone subjects. Scientific Reports 10 (1), 1-10.
Campos, D; Terán-Hilares, F; Chirinos, R; Aguilar-Galvez, A; García-Ríos, D; Pacheco-Avalos, A; Pedreschi, R. Bioactive compounds and antioxidant activity from harvest to edible ripeness of avocado cv. Hass (Persea americana) throughout the harvest seasons. International Journal of Food Science & Technology, 55, 2208-2218.
Lillo-Carmona, V; Espinoza, A; Rothkegel, K; Nilo-Poyanco, D; Pedreschi, R; Campos-Vargas, R; Meneses, C. Identification of metabolite and lipid profile in a segregating peach population associated with mealiness in peach. Metabolites, 10, 154.
RA Verdugo, A Di Genova, L Herrera, M Moraga, M Acuña, S Berríos, E Llop, CY Valenzuela, ML Bustamante, D Digman, A Symon, S Asenjo, P López, A Blanco, J Suazo, E Barozet, F Caba, M Villalón, S Alvarado, D Cáceres, K Salgado, P Portales, A Moreno-Estrada, CR Gignoux, K Sandoval, CD Bustamante, C Eng, S Huntsman, EG Burchard, N Loira, A Maass, L Cifuentes. Development of a small panel of SNPs to infer ancestry in Chileans that distinguishes Aymara and Mapuche components. Biological Research 53 (1), 1-11.
Carlos Galarce, Diego Fischer, Beatriz Díez, Ignacio T. Vargas, Gonzalo E. Pizarro. Dynamics of biocorrosion in copper pipes under actual drinking water conditions. Water. 12(4): 1036. https://doi.org/10.3390/w12041036.
Cuevas E., Vianna JA, Botero-Delgadillo E., Doussang E., González-Acuña D., Barroso O., Rozzi R., Vásquez R.A., Quirici V. Latitudinal gradients of haemosporidian parasites: Prevalence, diversity and drivers of infection in the Thorn-tailed Rayadito (Aphrastura spinicauda). International Journal for Parasitology: Parasites and Wildlife, 11: 1-11. https://doi.org/10.1016/j.ijppaw.2019.11.002
J Swift, JM Alvarez, V Araus, RA Gutiérrez, GM Coruzzi. Nutrient dose-responsive transcriptome changes driven by Michaelis–Menten kinetics underlie plant growth rates. Proceedings of the National Academy of Sciences, 117 (23), 12531-12540.
Alvarado, L; Saa, S; Cuneo, I; Pedreschi, R; Morales, J; Larach, A; Barros, W; Besoain, X. A comparison of immediate and short-term defensive responses to Phytophthora species infection in both susceptible and resistant walnut rootstocks. Plant Disease, 104, 921-929.
D Mandakovic, Á Cintolesi, J Maldonado, SN Mendoza, M Aïte, A Gaete, F Saitua, M Allende, V Cambiazo, A Siegel, A Maass, M Gonzalez, M Latorre. Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment. Scientific Reports 10 (1), 1-13.
Varas, Macarena A.; Muñoz-Montecinos, Carlos; Kallens, Violeta; Simon, Valeska; Allende, Miguel L.; Marcoleta, Andrés E.; Lagos, Rosalba. Exploiting zebrafish xenografts for testing the in vivo antitumorigenic activity of microcin e492 against human colorectal cancer cells. Frontiers in Microbiology 11 10.3389/fmicb.00405
Lois NA, Campagna L, Balza U, Polito MJ, Pütz K, Vianna JA, Morgenthaler A, Frere E, Sáenz‐Samaniego R, Raya Rey A, Mahler B. Metapopulation dynamics and foraging plasticity in a highly vagile seabird, the southern rockhopper penguin. Ecology and Evolution. 10(7), 3346-3355.
D Travisany, E Goles, M Latorre, MP Cortés, A Maass. Generation and robustness of Boolean networks to model Clostridium difficile infection. Natural Computing 19 (1), 111-134.
González B.A., Agapito A.M., Novoa-Muñoz F., Vianna J., Johnson W.E., Marín J.C. Utility of genetic variation in coat color genes to distinguish wild, domestic and hybrid South American camelids for forensic and judicial applications. Forensic Science International: Genetics, 45, 102226, https://doi.org/10.1016/j.fsigen.2019.102226
Levy H., Fiddaman S.R., Vianna JA, Noll D., Clucas G.V, Sidhu J.K.H., Polito M.J., Bost C.A., Phillips R.A., Crofts S., Miller G.D., Pistorius P., Bonnadonna F., Le Bohec C., Barbosa A.A., Trathan P., Raya Rey A, Frantz L.A.F., Hart T, Smith A.L. Evidence of pathogen-induced immunogenetic selection across the large geographic range of a wild seabird. Molecular Biology and Evolution, 37(6), 1708–1726. https://doi.org/10.1093/molbev/msaa040
JM Yáñez, G Yoshida, A Barria, R Palma-Véjares, D Travisany, D Díaz, G Cáceres, MI Cádiz, ME López, JP Lhorente, A Jedlicki, J Soto, D Salas, A Maass. High-throughput single nucleotide polymorphism (SNP) discovery and validation through whole-genome resequencing in Nile tilapia (Oreochromis niloticus). Marine Biotechnology 22 (1), 109-117.
Chávez, Myra N.; Morales, Rodrigo A.; López-Crisosto, Camila; Roa, Juan Carlos; Allende, Miguel L.; Lavandero, Sergio. Autophagy activation in zebrafish heart regeneration. Scientific Reports. 10 (1) https://doi.org/10.1038/s41598-020-59106-z
PA Naulin, GI Armijo, AS Vega, KP Tamayo, DE Gras, J de la Cruz, RA Gutiérrez. Nitrate Induction of Primary Root Growth Requires Cytokinin Signaling in Arabidopsis thaliana. Plant and Cell Physiology 61 (2), 342-352.
E Pérez-Palma, BI Bustos, D Lal, S Buch, L Azocar, MR Toliat, W Lieb, A Franke, S Hinz, G Burmeister, W von Shönfels, C Schafmayer, P Ahnert, H Völzke, U Völker, G Homuth, MM Lerch, K Puschel, RA Gutiérrez, J Hampe, P Nürnberg, JF Miquel, GV De Ferrari. Copy number variants in lipid metabolism genes are associated with gallstones disease in men. European Journal of Human Genetics 28 (2), 264-273.
Aguilar-Galvez, A; Pedreschi, R; Carpentier, S; Chirinos, R; García-Ríos, D; Campos, D. Proteomics analysis of mashua (Tropaelum tuberosum) tubers subjected to postharvest treatments. Food Chemistry, 305, 125485.
Paulina B. Ramírez, Sebastián Fuentes-Alburquenque, Beatriz Díez, Ignacio Vargas, Carlos A. Bonilla. Soil microbial community responses to labile organic carbon fractions in relation to soil type and land use along a climate gradient. Soil Biology & Biochemistry. 10.1016/j.soilbio.107692
Rojas-Benítez, Diego; L. Allende, Miguel. Elongator subunit 3 (Elp3) is required for zebrafish trunk development. international Journal of Molecular Science, 21 (3). 10.3390/ijms21030925.
Juan Carlos Fernández Cadena, Paula Ruíz-Fernández, Telmo Eduardo Fernández-Ronquillo, Beatríz Díez, Nicole Trefault, Santiago Andrade, Rodrigo de la Iglesia. Detection of sentinel bacteria in mangrove sediments contaminated with heavy metals. Marine Pollution Bolletin. 10.1016/j.marpolbul.110701
MP Cortés, V Acuña, D Travisany, A Siegel, A Maass, M Latorre. Integration of Biological Networks for Acidithiobacillus thiooxidans Describes a Modular Gene Regulatory Organization of Bioleaching Pathways. Frontiers in Molecular Biosciences 6, 155.
A Zúñiga, P Aravena, R Pulgar, D Travisany, J Ortiz-Severín, FP Chávez, A Maass, M González, V Cambiazo. Transcriptomic changes of Piscirickettsia salmonis during Intracellular growth in a salmon macrophage-like cell line. Frontiers in Cellular and Infection Microbiology, 9, 426.
BOOKS
Pedreschi, R. El aguacate de mercados distantes. In: Namesny, A; Conesa, C; Hormaza, I; Lobos, G. (eds.). Cultivo, poscosecha y procesado del aguacate. Biblioteca Horticultura SPE3 S.L, Valencia, Spain. ISBN: 978-84-16909-31-5.
Cole T.L., Dutoit L., Dussex N., Hart H., Alexander A., Younger J.L., Clucas G.V., Frugone M.J., Cherel Y., Cuthbert R., Ellenberg U., Fiddaman S.R., Hiscock J., Houston D., Jouventin P., Mattern T., Miller G., Miskelly C., Nolan P., Polito M.J., Quillfeldt P., Ryan P.G., Smith A., Tennyson A.J.D., Thompson D., Wienecke B., Vianna J.A., Waters J.M. Receding ice drove parallel expansions in Southern Ocean penguins. Proceedings of the National Academy of Sciences Dec 2019, 116(52): 26690-26696; DOI: 10.1073/pnas.1904048116
JR Wood, FP Díaz, C Latorre, JM Wilmshurst, OR Burge, F González, RA Gutiérrez. Ancient parasite DNA from late Quaternary Atacama Desert rodent middens. Quaternary Science Reviews 226, 106031.
RM Young, KB Ewan, VP Ferrer, Allende ML, J Godovac-Zimmermann, TC Dale, SW Wilson. Developmentally regulated Tcf7l2 splice variants mediate transcriptional repressor functions during eye formation. eLife 8.
N Cruz, T Méndez, P Ramos, D Urbina, A Vega, RA Gutiérrez, MA Moya-León, R Herrera. Induction of PrMADS10 on the lower side of bent pine tree stems: potential role in modifying plant cell wall properties and wood anatomy. Scientific Reports 9 (1), 1-16
B Pollak, A Cerda, M Delmans, S Álamos, T Moyano, A West, RA Gutiérrez, NJ Patron, F Federici, J Haseloff. Loop assembly: a simple and open system for recursive fabrication of DNA circuits. New Phytologist 222 (1), 628-640.
Carrasco-Valenzuela, T; Muñoz-Espinoza, C; Riberos, A; Pedreschi, R; Arus, P; Campos-Vargas, R; Meneses, C. Expression QTL (eQTLs) analyses reveal candidate genes associated with fruit flesh softening rate in peach [Prunus persica (L.) Batsch]. Frontiers in Plant Sciences, 10, article 1581.
JM Alvarez, TC Moyano, T Zhang, DE Gras, FJ Herrera, V Araus, JA O’Brien, L Carrillo, J Medina, J Vicente-Carbajosa, J Jiang, RA Gutiérrez. Local changes in chromatin accessibility and transcriptional networks underlying the nitrate response in Arabidopsis roots. Molecular Plant 12 (12), 1545-1560.
K Fehrmann-Cartes, M Coronado, AJ Hernandez, Allende ML, CG Feijoo. Anti-inflammatory effects of aloe vera on soy meal-induced intestinal inflammation in zebrafish. Fish & Shellfish Immunology, 95, 564-573.
A Vega, JA O’Brien, RA Gutiérrez. Nitrate and hormonal signaling crosstalk for plant growth and development. Current Opinion in Plant Biology 52, 155-163.
J Ortiz-Severín, D Travisany, A Maass, F P. Chávez, V Cambiazo. Piscirickettsia salmonis cryptic plasmids: source of mobile DNA and virulence factors. Pathogens 8 (4), 269.
Jaime Alcorta, Pablo Vergara, Laura A. Antonaru, María E. Alcamán-Arias, Dennis J. Nürnberg, Beatriz Díez. Fischerella thermalis: a model organism to study thermophilic diazotrophy, photosynthesis and multicellularity in Cyanobacteria. Extremophiles. 1-13. https://doi.org/10.1007/s00792-019-01125-4
M Miranda, JT Egaña, Allende ML, A Eblen-Zajjur. Myocardial monophasic action potential recorded by suction electrode for ionic current studies in zebrafish. Zebrafish 16 (5), 427-433.
JP Parra-Rojas, A Largo-Gosens, T Carrasco, J Celiz-Balboa, V Arenas-Morales, P Sepúlveda-Orellana, H Temple, D Sanhueza, F C Reyes, C Meneses, S Saez-Aguayo, A Orellana. New steps in mucilage biosynthesis revealed by analysis of the transcriptome of the UDP-rhamnose/UDP-galactose transporter 2 mutant. Journal of Experimental Botany 70 (19), 5071-5088.
G Cáceres, ME López, MI Cádiz, GM Yoshida, A Jedlicki, R Palma-Véjares , D Travisany , D Díaz-Domínguez, A Maass, JP Lhorente, J Soto , D Salas, JM Yáñez. Fine mapping using whole-genome sequencing confirms anti-Müllerian hormone as a major gene for sex determination in farmed Nile tilapia (Oreochromis niloticus L.) G3: 9 (10), 3213-3223. doi: 10.1534/g3.119.400297
Frugone, M. J., López, M. E., Segovia, N. I., Cole, T. L., Lowther, A., Pistorius, P., & Polanowski, A. Wieneckeo B., Bi K., Wang-Claypool C.Y., Watersg J.M., Bowie R.C.K, Poulin E., Vianna J.A. More than the eye can see: Genomic insights into the drivers of genetic differentiation in Royal/Macaroni penguins across the Southern Ocean. Molecular Phylogenetics and Evolution, 139, 106563
Uribe- Lorio, Lorena; Brenes, Laura; Hernández-Ascencio, Walter; Mora-Amador, Raúl; González, Gino; Ramírez-Umaña, Carlos; Díez, Beatriz; Pedrós-Alió, Carlos. The influence of temperature and pH on community composition of microbial mats in hot springs from Costa Rica. MicrobiologyOpen. 00:e893. DOI: 10.1002/mbo3.893
D Travisany, A Ayala-Raso, A Di Genova, L Monsalve, M Bernales, JPablo Martínez, M González-Agüero, B Defilippi, S Cherian, A Maass, L Fuentes. RNA-Seq analysis and transcriptome assembly of raspberry fruit (Rubus idaeus Heritage) revealed several candidate genes involved in fruit development and ripening. Scientia Horticulturae, 254, 26-34.
Uarrota, V; Fuentealba, C; Hernández, I; Defilippi, B; Meneses, C; Campos-Vargas, R; Hertog, M; Nicolai, B; Carpentier, S; Poblete-Echeverría, C; Pedreschi, R. Integration of proteomics and metabolomics data of early and middle season Hass avocados under heat treatment. Food Chemistry, 289, 512-521.
C Anguita-Salinas, M Sánchez, RA Morales, ML Ceci, D Rojas-Benítez, Allende ML. Cellular dynamics during spinal cord regeneration in larval zebrafish. Developmental Neuroscience 41 (1-2), 112-122.
R Nilo‐Poyanco, P Vizoso, D Sanhueza, I Balic, C Meneses, A Orellana, R Campos‐Vargas. A Prunus persica genome‐wide RNA‐seq approach uncovers major differences in the transcriptome among chilling injury sensitive and non‐sensitive varieties. Physiologia Plantarum 166 (3), 772-793.
C Cabezas, S Donoso, A Maass. Directional dynamical cubes for minimal-systems. Ergodic Theory and Dynamical Systems 40 (12), 3257-3295.
MP Salazar, D Valenzuela, M Tironi, RA Gutiérrez. The ambivalent regulator: the construction of a regulatory style for genetically modified crops in Chile. Tapuya: Latin American Science, Technology and Society 2 (1), 199-219.
S Paredes-Zúñiga, N Trost, F Javiera, J Alcayaga, Allende ML. Behavioral effects of triadimefon in zebrafish are associated with alterations of the dopaminergic and serotonergic pathways. Progress in Neuro-Psychopharmacology and Biological Psychiatry, 92, 118-126.
G Aedo, M Miranda, MN Chávez, Allende ML, JT Egaña. A reliable preclinical model to study the impact of cigarette smoke in development and disease. Current Protocols in Toxicology, 80 (1), e78.
P Falter-Braun, S Brady, RA Gutiérrez, GM Coruzzi, G Krouk. iPlant Systems Biology (iPSB): an international network hub in the plant community. Molecular Plant 12 (6), 727-730.
PA Saa, MP Cortés, J López, D Bustos, A Maass, E Agosin. Expanding metabolic capabilities using novel pathway designs: computational tools and case studies. Biotechnology Journal, 14 (9), 1800734.
A Rojas, H Sepulveda, B Henriquez, R Aguilar, T Opazo, G Nardocci, F Bustos, JB Lian, JL Stein, GS Stein, B van Zundert, AJ van Wijnen, Allende ML, M Montecino. Mll‐COMPASS complexes mediate H3K4me3 enrichment and transcription of the osteoblast master gene Runx2/p57 in osteoblasts. Journal of Cellular Physiology, 234 (5), 6244-6253.
Gálvez Ranilla, L; Huamán-Alvino, C; Flores-Báez, O; Aquino- Méndez, E; Chirinos, R; Campos, D; Sevilla, R; Fuentealba, C; Pedreschi, R; Sarkar, D; Shetty, K. Evaluation of phenolic antioxidant-linked in vitro bioactivity of Peruvian corn (Zea mays L.) diversity targeting for potential management of hyperglycemia and obesity. Journal of Food Science & Technology, 56, 2909-2924.
Tomas Alarcón-Schumacher, Sergio Guajardo-Leiva, Josefa Antón, Beatriz Díez. Viral community shifts during a phytoplankton bloom on the West Antarctic Peninsula. Frontiers in Microbiology, section Extreme Microbiology. 10:1014. doi: 10.3389/fmicb.01014
Dantas G.P.M., Oliveira L.R., Santos A.M., Flores M.D., de Melo D.R.,Simeone A., González-Acuña D., Luna-Jorquera D., Le Bohec C., Valdés-Velásquez A., Cardeña M., Morgante S.J., Vianna J.A. Uncovering population structure in the Humboldt penguin (Spheniscus humboldti) along the Pacific coast at South America. PLoS ONE 14(5): e0215293. https://doi.org/10.1371/journal.pone.0215293
Catalina Urrejola, Jaime Alcorta, Loreto Salas, Mónica Vásquez, Martin F Polz, Rafael Vicuña, Beatriz Díez. Genomic Mechanisms for Desiccation Tolerance and EPS Biosynthesis in the Atacama’s Cyanobacterium Gloeocapsopsis sp. 1H9. Frontiers in Microbiology, section Evolutionary and Genomic Microbiology.doi.org/10.3389/fmicb.00950
M Latorre, JL Burkhead, C Hodar, M Arredondo, M González, M Araya. Chronic copper treatment prevents the liver critical balance transcription response induced by acetaminophen. Journal of Trace Elements in Medicine and Biology 53, 113-119.
MD Brooks, J Cirrone, AV Pasquino, JM Alvarez, J Swift, S Mittal, CL Juang, K Varala, RA Gutiérrez, G Krouk, D Shasha, GM Coruzzi. Network walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions. Nature Communications 10 (1), 1-13.
AM Quesille-Villalobos, A Parra, F Maza, P Navarrete, M González, M Latorre, M Toro, A Reyes-Jara. The combined effect of cold and copper stresses on the proliferation and transcriptional response of Listeria monocytogenes. Frontiers in Microbiology 10, 612.
Campos, D; Aguilar-Galvez, A; García-Ríos, D; Chirinos, R; Limaymanta, E; Pedreschi, R. Postharvest storage and cooking techniques affect the stability of glucosinolates and myrosinase activity of Andean mashua tubers (Tropaeolum tuberosum). International Journal of Food Science & Technology, 54, 2387-2395.
Bernal, Ximena E. et al. Empowering Latina scientists. Science. Washington: Amer Assoc Advancement Science, v. 363, n. 6429, p. 825-826.
L Heirendt, S Arreckx, TPfau, SN Mendoza, A Richelle, A Heinken, Hn Haraldsdóttir, J Wachowiak, SM Keating, V Vlasov, S Magnusdóttir, C Yu Ng, G Preciat, A Žagare, SHJ Chan, MK Aurich, CM Clancy, J Modamio, JT Sauls, A Noronha, A Bordbar, B Cousins, DC El Assal, LV Valcarcel, I Apaolaza, S Ghaderi, M Ahookhosh, M Ben Guebila, A Kostromins, N Sompairac, HM Le, DMa, YSun, L Wang, JT Yurkovich, MAP Oliveira, PT Vuong, LP El Assal, I Kuperstein, A Zinovyev, HS Hinton, WA Bryant, FJ Aragón Artacho, FJ Planes, E Stalidzans, A Maass, S Vempala, MHucka, MA Saunders, CD Maranas, NE Lewis, T Sauter, BØ. Palsson, I Thiele, RMT Fleming. Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0. Nature Protocols 14 (3), 639-702.
RM Young, TA Hawkins, F Cavodeassi, HL Stickney, Q Schwarz, LM Lawrence, C Wierzbicki, BYL Cheng, J Luo, E Mayela Ambrosio, A Klosner, IM Sealy, J Rowell, CA Trivedi, IH Bianco, Allende ML, EM Busch-Nentwich, G Gestri, SW Wilson. Compensatory growth renders Tcf7l1a dispensable for eye formation despite its requirement in eye field specification. eLife 8, e40093.
RA Morales, Allende ML. Peripheral macrophages promote tissue regeneration in zebrafish by fine-tuning the inflammatory response. Frontiers in Immunology 10, 253.
EA Vidal, TC Moyano, BI Bustos, E Pérez-Palma, C Moraga, E Riveras, A Montecinos, L Azócar, DC Soto, M Vidal, A Di Genova, K Puschel, P Nürnberg, S Buch, J Hampe, Allende ML, V Cambiazo, M González, C Hodar, M Montecino, C Muñoz-Espinoza, A Orellana, A Reyes-Jara, D Travisany, P Vizoso, M Moraga, S Eyheramendy, A Maass, GV De Ferrari, JF Miquel, RA Gutiérrez. Whole genome sequence, variant discovery and annotation in Mapuche-Huilliche Native South Americans. Scientific Reports 9 (1), 1-11.
T Del Pozo, S Miranda, M Latorre, F Olivares, L Pavez, R Gutiérrez, J Maldonado, P Hinrichsen, BG Defilippi, A Orellana, M González. Comparative transcriptome profiling in a segregating peach population with contrasting juiciness phenotypes. Journal of Agricultural and Food Chemistry, 67 (5), 1598-1607.
Vergara-Pulgar, C; Rothkegel, K; Pedreschi, R; Campos-Vargas, R; González-Agüero, M; Defilippi, B; Meneses, C. De novo assembly and profile of Persea americana cv. ‘Hass’ transcriptome during fruit development. BMC Genomics, 20:108.
I Fredes, S Moreno, FP Díaz, RA Gutiérrez. Nitrate signaling and the control of Arabidopsis growth and development. Current Opinion in Plant Biology 47, 112-118.
F Maza, J Maldonado, J Vásquez-Dean, D Mandakovic, A Gaete, V Cambiazo, M González. Soil bacterial communities from the Chilean Andean highlands: taxonomic composition and culturability. Frontiers in Bioengineering and Biotechnology, 7, 10.
FP Díaz, C Latorre, G Carrasco‐Puga, JR Wood, JM Wilmshurst, DC Soto, TL Cole, RA Gutiérrez. Multiscale climate change impacts on plant diversity in the Atacama Desert. Global Change Biology 25 (5), 1733-1745.
B Fernández-Gómez, J Maldonado, D Mandakovic, A Gaete, RA Gutiérrez, A Maass, V Cambiazo, M González. Bacterial communities associated to Chilean altiplanic native plants from the Andean grasslands soils. Scientific Reports, 9 (1), 1-12.
Bernabé I Bustos, Eduardo Pérez-Palma, Stephan Buch, Lorena Azócar, Eleodoro Riveras, Giorgia D Ugarte, Mohammad Toliat, Peter Nürnberg, Wolfgang Lieb, Andre Franke, Sebastian Hinz, Greta Burmeister, Witigo von Schönfels, Clemens Schafmayer, Henry Völzke, Uwe Völker, Georg Homuth, Markus M Lerch, José Luis Santos, Klaus Puschel, Claudia Bambs, Juan Carlos Roa, Rodrigo A Gutiérrez, Jochen Hampe, Giancarlo V De Ferrari, Juan Francisco Miquel. Variants in ABCG8 and TRAF3 genes confer risk for gallstone disease in admixed Latinos with Mapuche Native American ancestry. Scientific Reports ,9 (1), 1-12.
Pedreschi, R; Uarrota, V; Fuentealba, C; Alvaro, J; Olmedo, P; Defilippi, B; Meneses, C; Campos-Vargas, R. Primary metabolism in avocado fruit. Frontiers in Plant Science, 10, article 795.
Doussang, D., González-Acuña, D., Torres-Fuentes, L.G., Stephen C. Lougheed S.C., Clemente-Carvalho R.B., Kian Greene K. C., Vianna J.A. Spatial distribution, prevalence and diversity of haemosporidians in the rufous-collared sparrow, Zonotrichia capensis. Parasites & Vectors 12:2. https://doi.org/10.1186/s13071-018-3243-4
Beatriz Fernández-Gómez, Beatriz Díez, Martin Polz, José Ignacio Arroyo, Fernando D. Alfaro, Germán Marchandon, Cynthia Sanhueza, Laura Farías, Nicole Trefault, Pablo A. Marquet, Marco A. Molina-Montenegro, Peter Sylvander, Pauline Snoeijs-Leijonmalm. Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85-90 ºN. The ISME Journal. 13(2):316-333. DOI:10.1038/s41396-018-0268-9
Rodriguez, F; Pedreschi, R; Fuentealba, C; De Kartzow, A; Olaeta, J.A; Alvaro, J.E. The increase of the electrical conductivity in the nutrient solution management positively affects physiological and physico-chemical parameters, metabolomic composition and sensory acceptance of tomate fruit cv. Patrón. Scientia Horticulturae, 244, 388-398.
F Durand, A Frank, A Maass. Eigenvalues of minimal Cantor systems. Journal of the European Mathematical Society 21 (3), 727–775.
ME López, L Benestan, JS Moore, C Perrier, J Gilbey, A Di Genova, A Maass, D Diaz, JP Lhorente, K Correa, R Neira, L Bernatchez, JM Yáñez. Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L.) populations with different geographical origins. Evolutionary Applications 12 (1), 137-156.
BOOKS
MA Varas, J Ortíz-Severín, AE Marcoleta, CA Santiviago, Allende ML, FP Chávez. Static Immersion and Injection Methods for Live Cell Imaging of Foodborne Pathogen Infections in Zebrafish Larvae. In: Bridier, A. (eds) Foodborne Bacterial Pathogens. Methods in Molecular Biology, vol 1918. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-9000-9_15
Pouchucq L, Undurraga CA, Fuentes R, Cornejo M, Allende ML, Monasterio A. γ-Tubulin small complex formation is essential for early zebrafish embryogenesis. Mechanisms of Development, 154, 145-152. https://doi.org/10.1016/j.mod.2018.06.006.
Zepeda, B; Olmedo, P; Ejsmentewicz, T; Sepúlveda, P; Balic, I; Moreno, A; Balladares, C; Delgado-Rioseco, J; Fuentealba, C; Defilippi, B; Meneses, C; Pedreschi, R; Campos-Vargas, R. Cell wall and metabolite composition of berries of Vitis vinifera (L.) cv Thompson Seedless with different firmness. Food Chemistry, 268, 492-497.
Frugone, M. J., Lowther, A., Noll, D., Ramos, B., Pistorius, P., Dantas, G. P. M. Dantas, M. V. Petry, F. Bonadonna, A. Steinfurth, A. Polanowski, A. Raya Rey, N. A. Lois, K. Pütz, P. Trathan, B. Wienecke, E. Poulin & J. A. Vianna. Contrasting phylogeographic pattern among Eudyptes penguins around the Southern Ocean. Scientific Reports, 8(1), 17481.
JR Wood, FP Díaz, C Latorre, JM Wilmshurst, OR Burge, RA Gutiérrez. Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile. Scientific Reports 8 (1), 1-8.
KA Meacham, MP Cortés, EM Wiggins, A Maass, M Latorre, M Ralle, JL Burkhead. Altered zinc balance in the Atp7b−/− mouse reveals a mechanism of copper toxicity in Wilson disease. Metallomics 10 (11), 1595-1606.
Jaime Alcorta, Sebastián Espinoza, Tomeu Viver, María Estrella Alcamán, Nicole Trefault, Ramon Rosselló-Móra, Beatriz Díez. Temperature modulates Fischerella thermalis ecotypes in Porcelana hot spring. Systematic and Applied Microbiology. 44 (6): 531-543. doi.org/10.1016/j.syapm.05.006
Parada M, Clatworthy A, Hagendorn EJ, Ernst C, Henninger JE, Riquelme R, Jijón H, Villablanca EJ, Zon LI, Hung D, Allende ML. Generation of mouse-zebrafish hematopoietic tissue chimeric embryos by xenotransplantation. Disease Models & Mechanisms, 11: dmm034876. doi: 10.1242/dmm.034876.
L Bermúdez, T Del Pozo, B Silvestre Lira, F de Godoy, I Boos, C Romano, V Previtali, J Almeida, C Bréhélin, R Asis, L Quadrana, D Demarco, S Alseekh, R S Gamboa, L Pérez-Flores, PG Dominguez, C Rothan, AR Fernie, M González, A Stocker, A Hemmerle, M Hartving Clausen, F Carrari, M Rossi. A tomato tocopherol-binding protein sheds light on intracellular α-tocopherol metabolism in plants. Plant and Cell Physiology 59 (11), 2188-2203.
Sebastián Fuentes, José Ignacio Arroyo, Susana Rodríguez-Marconi, Italo Masotti, Tomás Alarcón-Schumacher, Martin F. Polz, Nicole Trefault, Rodrigo de la Iglesia, Beatriz Díez. Summer phyto- and bacterioplankton communities during low and high productivity scenarios in the Western Antarctic Peninsula. Polar Biology. 1-11. doi.org/10.1007/s00300-018-2411-5
María E. Alcamán-Arias, Carlos Pedrós-Alió, Javier Tamames, Camila Fernández, Danilo Pérez-Pantoja, Mónica Vásquez, Beatriz Díez. Diurnal changes in active carbon and nitrogen pathways along the temperature gradient in Porcelana hot spring microbial mat. Frontiers in Microbiology. 9:2353. Doi.org/10.3389/fmicb.02353
Eleodoro Riveras, Lorena Azocar, Tomas Custodio Moyano, Marcia Ocares, Hector Molina,Juan Carlos Roa, Jose Rafael Valbuena, Rodrigo Antonio Gutierrez, Juan Francisco Miquel.The role of zinc, inflammation and duodenal mucosal integrity in cholesterol gallstone diseases. The American Journal of Gastroenterology 113, S666-S666.
Sergio Guajardo-Leiva, Carlos Pedrós-Alió, Oscar Salgado, Fabián Pinto, Beatriz Díez. Active crossfire between cyanobacteria and cyanophages in phototrophic mat communities within hot springs. Frontiers Microbiology. 9: 2039. Doi: 10.3389/fmicb.02039
Pedreschi, F; Saavedra, I; Bunger, A; Zuñiga, R; Pedreschi, R; Chirinos, R; Campos, D; Mariotti, S. Tara pod (Caesalpinia spinosa) extract mitigates neo-contaminant formation in Chilean bread preserving their sensory attributes. LWT Food Science & Technology, 95, 116-122.
García-Mazcorro, J; Pedreschi, R; Chew, B; Dowd, S; Kawas, J; Noratto, G. Dietary supplementation with apple extracts modifies the fecal microbiota in obese diabetic db/db mice. Plos One, 14(3), e0212586.
García-Mazcorro, J; Pedreschi, R; Chew, B; Dowd, S; Kawas, J; Noratto, G. Dietary supplementation with raspberry extracts modifies the fecal microbiota in obese diabetic db/db mice. Journal of Microbiology & Biotechnology, 28, 1247-1259.
Awan B, Turkov D, Schumacher C, Jacobo A, McEnerney A, Xu G, Park D, Kalomoiris S, Nolta J, Jao L-E, Allende ML, Lebrilla C, Fierro FA. FGF2 induces migration of human bone marrow stromal cells by increasing core-fucosylations on N-glycans of integrins. Stem Cell Reports, 11(2), 325-333. https://doi.org/10.1016/j.stemcr.2018.06.007.
Mauricio Muñoz-Llanos, María A García-Pérez, Xiaojiang Xu, Macarena Tejos-Bravo, Elena A Vidal, Tomás C Moyano, Rodrigo A Gutiérrez, Felipe I Aguayo, Aníbal Pacheco, Gonzalo García-Rojo, Esteban Aliaga, Paulina S Rojas, John A Cidlowski, Jenny L Fiedler. MicroRNA profiling and bioinformatics target analysis in dorsal hippocampus of chronically stressed rats: relevance to depression pathophysiology. Frontiers in Molecular Neuroscience, 6(11), 251.
Mora M, Medina-Vogel G, Sepúlveda MA, Noll D, Álvarez-Varas R, Vianna JA. Genetic structure of introduced American mink (Neovison vison) in Patagonia: colonization insights and implications for control and management strategies. Wildlife Research 45(4), 344-356. https://doi.org/10.1071/WR18026
SR Narum, A Di Genova, SJ Micheletti, A Maass. Genomic variation underlying complex life-history traits revealed by genome sequencing in Chinook salmon. Proceedings of the Royal Society B: Biological Sciences 285 (1883), 20180935
M Latorre, D Quenti, D Travisany, KV Singh, BE Murray, A Maass, V Cambiazo. The Role of Fur in the transcriptional and Iion homeostatic response of Enterococcus faecalis. Frontiers in Microbiology 9, 1580.
Alvares-Varas R, Morales-Moraga D, González-Acuña D, Klarian SA, Vianna JA. Mercury exposure in Humboldt (Spheniscus humboldti) and chinstrap (Pygoscelis antarctica) penguins throughout Chilean coast and Antarctica. Archives of Environmental Contamination and Toxicology. 75(1):75-86. doi: 10.1007/s00244-018-0529
Chirinos, R; Ochoa, K; Aguilar-Gálvez, A; Carpentier, S; Pedreschi, R; Campos, D. Obtaining of peptides with antioxidant and antihypertensive properties from cañihua protein (Chenopodium pallidicaule Aellen). Journal of Cereal Science, 83, 139-146.
Isidora Mura-Jornet; Carolina Pimentel; Gisele PM Dantas; María Virginia Petry; Daniel González-Acuña; Andrés Barbosa; Andrew D Lowther; Kit M Kovacs; Elie Poulin; Juliana A. Vianna. Chinstrap penguin population structure: one or more populations along the Southern Ocean? BMC Evolutionary Biology. Mura-Jornet et al. BMC Evolutionary Biology. 18:90. https://doi.org/10.1186/s12862-018-1207-0
Marcoleta A, Varas M, Ortiz-Severín J, Vásquez L, Berríos-Pastén C, Sabag A, Chávez FP, Allende ML, Santiviago C, Monasterio O, Lagos R. Evaluating different virulence traits of Klebsiella pneumoniae using Dictyostelium discoideum and zebrafish larvae as host models. Frontiers in Cellular and Infection Microbiology, 8, 30. https://doi.org/10.3389/fcimb.2018.00030
M Aite, M Chevallier, C Frioux, C Trottier, J Got, MP Cortés, SN Mendoza, G Carrier, O Dameron, N Guillaudeux, M Latorre, N Loira, GV Markov, A Maass, A Siegel. Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models. PLoS Computational Biology 14 (5), e1006146
C Hodar, V Cambiazo. The dorsoventral patterning of Musca domestica embryos: insights into BMP/Dpp evolution from the base of the lower cyclorraphan flies. Evolutionary Developmental Biology 9 (13), 1-12.
Estrella Alcamán-Arias, laura Farías, Josefa Verdugo, Tomás Alarcón-Schumacher, Beatriz Díez. Microbial activity during a coastal summer phytoplankton Bloom on the Western Antarctic Peninsula in late summer. FEMS Microbiology Letters. 365 (10): fny090. doi.org/10.1093/femsle/fny090
A Di Genova, GA Ruz, MF Sagot, A Maass. Fast-SG: an alignment-free algorithm for hybrid assembly. GigaScience 7 (5), giy048
N Cifuentes‐Esquivel, J Celiz‐Balboa, C Henriquez‐Valencia, I Mitina, P Arraño‐Salinas, AA Moreno, C Meneses, F Blanco‐Herrera, A Orellana. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. Journal of Cellular Biochemistry, 119 (8), 6857-6868.
D Mandakovic, J Maldonado, R Pulgar, P Cabrera, A Gaete, V Urtuvia, M Seeger, V Cambiazo, M González. Microbiome analysis and bacterial isolation from Lejía Lake soil in Atacama Desert. Extremophiles 22 (4), 665-673
D Mandakovic, C Rojas, J Maldonado, M Latorre, D Travisany, E Delage, A Bihouée, G Jean, FP Díaz, B Fernández-Gómez, P Cabrera, A Gaete, C Latorre, RA Gutiérrez, A Maass, V Cambiazo, SA Navarrete, D Eveillard, M González. Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience. Scientific Reports 8 (1), 1-12.
L Pavez, N Tobar, C Chacon, R Arancibia, C Martínez, C Tapia, A Pastor, M González, J Martínez, PC Smith. Chitosan‐triclosan particles modulate inflammatory signaling in gingival fibroblasts. Journal of Periodontal Research 53 (2), 232-239.
O Contreras-López, TC Moyano, DC Soto, RA Gutiérrez. Step-by-step construction of gene co-expression networks from high-throughput arabidopsis RNA sequencing data. Root Development, 275-301.
Dantas GPM, Maria GC, Marasco ACM, Castro LT, Almeida VS, Santos FR, Oliveira LR, Crespo E, Frere E, Milliones C, González‑Acuña D, Morgante JS, Vianna JA. Demographic history of the Magellanic Penguin (Spheniscus magellanicus) on the Pacific and Atlantic coasts of South America. Journal of Ornithology 1-13. https://doi.org/10.1007/s10336-018-1538-z
M Cobo, R Gutiérrez-Romo, A Maass. Characterization of minimal sequences associated with self-similar interval exchange maps. Nonlinearity 31 (4), 1121
Terán-Hilares, R; Chirinos, R; Pedreschi, R; Campos, D. Enhanced antioxidant properties of tara gallotannins by thermal hydrolysis and its synergistic effects with ɑ-tocopherol, ascorbyl palmitate and citric acid on sacha inchi oil. Journal of Food Process Engineering, 41, e12613.
DE Gras, EA Vidal, SF Undurraga, E Riveras, S Moreno, J Dominguez-Figueroa, D Alabadi, MA Blázquez, J Medina, RA Gutiérrez. SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana. Journal of Experimental Botany, 69 (3), 619-631.
Ramos B., González-Acuña D., Loyola, D.E., Johnson W.E., P. G. Parker, M. Massaro, G. P. M. Dantas, M. D. Miranda, J. A. Vianna. Landscape genomics: natural selection drives the evolution of mitogenome in penguins. BMC Genomics. 19:53.
W Mardones, A Di Genova, MP Cortés, D Travisany, A Maass, J Eyzaguirre. The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes. Mycology 9 (1), 59-69.
Alvarez M, Chavez MN, Miranda M, Aedo G, Allende ML, Egaña JT. A Novel In Vivo Model to Study Impaired Tissue Regeneration Mediated by Cigarette Smoke. Scientific Reports, 8, 10926. https://doi.org/10.1038/s41598-018-28687-1
BOOKS
Campos, D; Chirinos, R; Gálvez, L; Pedreschi, R. Bioactive Potential of Andean and Amazonian fruits, seeds and tubers. In: Toldrá F (ed.). Advances in Food and Nutrition Research. Volume 84. Elsevier. ISBN: 978-0-12-814990-4.
MP Cortés, SN Mendoza, D Travisany, A Gaete, A Siegel, V Cambiazo, A Maass. Analysis of Piscirickettsia salmonis metabolism using genome-scale reconstruction, modeling, and testing. Frontiers in Microbiology 8, 2462.
Campos, D; Mescua, L; Aguilar-Gálvez, A; Chirinos, R; Pedreschi, R. Effect of Yacon (Smallanthus sonchifolius) fructooligosaccharide purification technique using activated charcoal or ion exchange fixed bed column on recovery, purity and sugar content. International Journal of Food Science and Technology, 52, 2637-2646.
J Friesner, SM Assmann, R Bastow, J Bailey-Serres, J Beynon, V Brendel, CR Buell, A Bucksch, W Busch, T Demura, JR Dinneny, CJ Doherty, AL Eveland, P Falter-Braun, MA Gehan, M Gonzales, E Grotewold, R Gutierrez, U Kramer, G Krouk, S Ma, RJC Markelz, M Megraw, BC Meyers, JAH Murray, NJ Provart, S Rhee, R Smith, EP Spalding, C Taylor, TK Teal, KU Torii, C Town, M Vaughn, R Vierstra, D Ware, O Wilkins, C Williams, SM Brady. The next generation of training for Arabidopsis researchers: Bioinformatics and quantitative biology. Plant Physiology 175 (4), 1499-1509.
Hernández, I; Fuentealba, C; Olaeta, J.A; Poblete, C; Defilippi, B; González, M; Campos-Vargas, R; Lurie, S; Pedreschi, R. Effects of heat shock and nitrogen shock pre-treatments on ripening heterogeneity of Hass avocados stored in controlled atmosphere. Scientia Horticulturae, 225, 408-415.
Fuentealba, C; Hernández, I; Olaeta, J.A; Defilippi, B; Meneses, C; Campos-Vargas, R; Lurie, S; Carpentier, S; Pedreschi, R. New insights into the heterogeneous ripening in Hass avocado via LC MS/MS proteomics. Postharvest Biology and Technology, 132, 51-61.
Fuentealba, C; Hernández, I; Saa, S; Toledo, L; Burdiles, P; Chirinos, R; Campos, C; Brown, P; Pedreschi, R. Color and in vitro quality attributes of walnuts from different growing conditions correlate with key precursors of primary and secondary metabolism. Food Chemistry, 232, 664-672.
Vianna JA, Noll D, Mura-Jornet I, Valenzuela-Guerra P, González-Acuña D, Navarro C, Loyola DE, Dantas GPM. Comparative genome-wide polymorphic microsatellite markers in Antarctic penguins via next generation sequencing. Genetics and Molecular Biology, 40 (3), 676-687.
Ahumada, J; Fuentealba, C; Olaeta, J.A; Undurraga, P; Pedreschi, R; Shetty, K; Chirinos, R; Campos, D; Gálvez-Ranilla, L. Bioactive compounds of loquat (Eriobotrya japonica Lindl.) cv. Golden Nugget grown in Chile and analysis of health-relevant functionality for hyperglycemia management using in vitro models. Ciencia e Investigación Agraria, 44(3), 207-214.
Mariam I. Hamisi, Charles Lugomela, Thomas J. Lyimo, Birgitta Bergman and Beatriz Díez. Plankton composition, biomass, phylogeny and toxin genes in Lake Big Momela, Tanzania. African Journal of Aquatic Science. 42, 109-121. doi.org/10.2989/16085914.2017.1334621.
G Armijo, RA Gutiérrez. Emerging players in the nitrate signaling pathway. Molecular Plant 10 (8), 1019-1022.
J Canales, O Contreras‐López, JM Álvarez, RA Gutiérrez. Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana. The Plant Journal 92 (2), 305-316.
Díaz-Pascual F, Ortíz-Severín J, Varas M, Allende ML, Chávez FP. In vivo host-pathogen interaction as revealed by global proteomic profiling of zebrafish larvae. Frontiers in Cellular and Infection Microbiology, 7, 334.
Retamal P, Llanos-Soto S, Moreno Salas L, López J, Vianna JA, Hernández J, Medina-Vogel G, Castañeda F, Fresno M, González-Acuña D. Isolation of drug-resistant Salmonella enterica serovar enteritidis strains in gentoo penguins from Antarctica. Polar Biology, 40(12), 2531-2536
N Loira, S Mendoza, M Paz Cortés, N Rojas, D Travisany, AD Genova, N Gajardo, N Ehrenfeld, A Maass. Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production. BMC Systems Biology 11 (1), 1-17.
Álvarez-Varas R, Contardo J, Heidemeyer M, Forero-Rozo L, Brito B, Cortés V, Brain MJ, Pereira S, Vianna JA. Ecology, health and genetic characterization of the southernmost green turtle (Chelonia mydas) aggregation in the Eastern Pacific: implications for local conservation strategies. Latin American Journal of Aquatic Research, 45(3), 540-554.
DJ Macqueen, CR Primmer, RD Houston, BF Nowak, L Bernatchez, S Bergseth, WS Davidson, C Gallardo-Escárate, T Goldammer, Y Guiguen, P Iturra, JW Kijas, BF Koop, S Lien, A Maass, SAM Martin, P McGinnity, M Montecino, KA Naish, KM Nichols, K Ólafsson, SW Omholt, Y Palti, GS Plastow, CE Rexroad, ML Rise, RJ Ritchie, SR Sandve, PM Schulte, A Tello, RVidal, J O Vik, A Wargelius, JM Yáñez. Functional annotation of all Salmonid genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture. BMC Genomics 18 (1), 1-9.
SPS Donoso, F Durand, A Maass. On automorphism groups of Toeplitz subshifts. Discrete Analysis, 11. June 15, 2017
Varas MA, Ortíz-Severín J, Marcoleta AE, Díaz-Pascual F, Allende ML, Santiviago CA, Chávez FP. Salmonella Typhimurium induce cloacitis-like symptoms in zebrafish larvae. Microbial Pathogenesis 107, 317-320.
Pastenes L, Valdivieso C, Di Genova A, Travisany D, Montecino M, Orellana A, González M, Gutiérrez RA, Allende ML, Maass A, Méndez MA. Transcriptome analysis provides insight on local temperature adaptation to geothermal streams in larvae of the Andean toad Rhinella spinulosa (Anura, Bufonidae). Scientific Reports, 7(1), 1966.
Garrido V, Mendoza-Torres E, Riquelme J, Diaz A, Pizarro M, Bustamante M, Chávez MN, Ocaranza MP, Mellado R, Corbalan R, Allende ML, Lavandero S. Novel Therapies Targeting Cardioprotection and Regeneration. Current Pharmaceutical Design, 23, 2592-2615.
Paredes-Zúñiga S, Morales RA, Muñoz-Sánchez S, Muñoz-Montecinos C, Parada M, Tapia K, Rubilar C, Allende ML, Peña OA. CXCL12a acts as a hematopoietic tissue neutrophil retention signal that antagonizes recruitment to an injury site in the zebrafish larva. Immunogenetics 69(5), 341-349.
SF Undurraga, C Ibarra-Henríquez, I Fredes, JM Álvarez, RA Gutiérrez. Nitrate signaling and early responses in Arabidopsis roots. Journal of Experimental Botany 68 (10), 2541-2551.
De la Paz J, Beiza N, Paredes-Zúñiga S, Hoare M, Allende ML. Triazole fungicides inhibit zebrafish hatching by blocking the secretory function of hatching gland cells. International Journal of Molecular Sciences ,18, 710.
C Rautengarten, D Birdseye, S Pattathil, HE McFarlane, S Saez-Aguayo, A Orellana, S Persson, MG Hahn, HV Scheller, JL Heazlewood, B Ebert. The elaborate route for UDP-arabinose delivery into the Golgi of plants. Proceedings of the National Academy of Sciences 114 (16), 4261-4266.
Varas MA, Fariña A, Díaz-Pascual F, Ortíz-Severín J, Marcoleta AE, Allende ML, Santiviago CA, Chávez FP. 2017a. Live cell imaging of Salmonella Typhimurium interaction with zebrafish larvae after injection and immersion delivery methods. Journal of Microbiological Methods, 135, 20-25.
Chirinos, R; Aquino, M; Pedreschi, R; Campos, D. Optimized methodology for alkaline and enzyme assisted extraction of protein from sacha inchi (Plukenetia volubilis) kernel cake. Journal of Food Process Engineering, 40, e12412.
K Correa, JP Lhorente, L Bassini, ME López, A Di Genova, A Maass, WS Davidson, JM Yáñez. Genome wide association study for resistance to Caligus rogercresseyi in Atlantic salmon (Salmo salar L.) using a 50K SNP genotyping array. Aquaculture 472 (1), 61-65.
Vianna JA, Noll D, Moreno L, Silva C, Muñoz-Leal S, Najle M, González-Acuña D. Record of an alleged extinct rodent: molecular analyses of the endemic Octodon pacificus from Chile. Journal of Mammalogy, 98(2), 456-463.
Estrella Alcamán, Jaime Alcorta, Birgitta Bergman, Mónica Vásquez, Martin Polz, Beatriz Díez. Physiological and gene expression responses to nitrogen regimes and temperatures in Mastigocladus sp. strain CHP1, a predominant thermotolerant cyanobacterium of hot Springs. Systematic and Applied Microbiology. 40, 102-113. doi: 10.1016/j.syapm.11.007.
T Puelma, V Araus, J Canales, EA Vidal, JM Cabello, A Soto, RA Gutierrez. GENIUS: web server to predict local gene networks and key genes for biological functions. Bioinformatics 33 (5), 760-761.
BOOKS
Pedreschi, R. 2017. Post-harvest proteomics of perishables. In: Colgrave Michelle (ed). 1st edition. Proteomics in food science, from farm to fork. Academic Press, USA. ISBN: 9780128040072.
Fuentealba, C; Pedreschi, R; Saavedra, J. A statistical approach to assess the heterogeneity of Hass avocados submitted to different postharvest abiotic stresses. Ciencia e Investigación Agraria, 43, 356-365.
Josefa Verdugo, Ellen Damm, Pauline Snoeijs, Beatriz Díez, Laura Farías. Climate relevant trace gases (N2O and CH4) in the Eurasian Basin (Arctic Ocean). Deep-Sea Research Part I. 117, 84-94. http://dx.doi.org/10.1016/j.dsr.08.016
T Del Pozo, R Gutiérrez-Garcia, M Latorre, M González, M Suazo. Identification of reference genes for quantitative real-time PCR studies in human cell lines under copper and zinc exposure. Biometals, 29 (5), 95-944.
M Acuña, V Castro-Fernández, M Latorre, J Castro, EH Schuchman, V Guixé, M González, S Zanlungo. Structural and functional analysis of the ASM p. Ala359Asp mutant that causes acid sphingomyelinase deficiency. Biochemical and Biophysical Research Communications, 479 (3), 496-501.
Pei W, Huang SC, Xu L, Pettie K Ceci ML, Sánchez M, Allende ML, Burgess SM. Loss of mgat5a mediated N-glycosylation stimulates regeneration in zebrafish. Cell Regeneration (London, England), 5, 3.
C Dominguez, A Zuñiga, P Hanna, C Hodar, M Gonzalez, V Cambiazo. Target genes of Dpp/BMP signaling pathway revealed by transcriptome profiling in the early D. melanogaster embryo. Gene, 591 (1), 191-200.
Sallaberry-Pincheira N, González-Acuña D, Padilla P, Dantas GPM, Luna-Jorquera G, Frere E, Valdés-Velásquez A, Vianna JA. Contrasting patterns of selection between MHC I and II across populations of Humboldt and Magellanic penguins. Ecology and Evolution, 6(20), 7498-7510.
M Latorre, MP Cortés, D Travisany, A Di Genova, M Budinich, A Reyes-Jara, C Hödar, M González, P Parada, RA Bobadilla-Fazzini, V Cambiazo, A Maass. The bioleaching potential of a bacterial consortium. Bioresource Technology, 218, 659-666.
H Temple, S Saez-Aguayo, FC Reyes, A Orellana. The inside and outside: topological issues in plant cell wall biosynthesis and the roles of nucleotide sugar transporters. Glycobiology, 26 (9), 913-925.
Rivera DS, Vianna JA, Ebensperger LA, Palma RE. Phylogeography and demographic history of the Andean degu, Octodontomys gliroides (Rodentia: Octodontidae) based on mitochondrial DNA. Zoological Journal of the Linnean Society, 178(2), 410–430.
S DebRoy, M Saldaña, D Travisany, A Montano, J Galloway-Peña, N Horstmann, H Yao, M González, A Maass, M Latorre, SA Shelburne. A multi-serotype approach clarifies the catabolite control protein a regulon in the major human pathogen group A streptococcus. Scientific Reports, 6 (1), 1-11.
Hernández, I; Fuentealba, C; Olaeta, J.A; Lurie, S; Defilippi, B;Campos-Vargas R; Pedreschi, R. Factors associated with postharvest ripening heterogeneity of Hass avocados (Persea americana Mill). Fruits, 71(5), 259-268.
A Orellana, C Moraga, M Araya, A Moreno. Overview of nucleotide sugar transporter gene family functions across multiple species. Journal of Molecular Biology, 428 (16), 3150-3165.
Carrillo SA, Anguita-Salinas C, Peña OA, Morales RA, Muñoz-Sánchez S, Muñoz-Montecinos C, Paredes-Zúñiga S, Tapia K, Allende ML. Macrophage recruitment contributes to regeneration of mechanosensory hair cells in the zebrafish lateral line. Journal of Cellular Biochemistry, 117(8), 1880-9.
Aguilar R, Bustos FJ, Sáez M, Rojas A, Allende ML, van Wijnen AJ, van Zundert B, Montecino M. Polycomb PRC2 complex mediates epigenetic silencing of critical osteogenic master regulators in the hippocampus. BBA – Gene Regulatory Mechanisms, 1859(8), 1043-55.
C Rodriguez-Furlán, H Salinas-Grenet, O Sandoval, C Recabarren, P Arraño-Salinas, S Soto-Alvear, A Orellana, F Blanco-Herrera. The root hair specific SYP123 regulates the localization of cell wall components and contributes to rizhobacterial priming of induced systemic resistance. Frontiers in Plant Science, 7, 1081.
J Yazaki, M Galli, AY Kim, K Nito, F Aleman, KN Chang, AR Carvunis, R Quan, H Nguyen, L Song, JM Alvarez, SC Huang, H Chen, N Ramachandran, S Altmann, RA Gutiérrez, DE Hill, JI Schroeder, J Chory, J LaBaer, M Vidal, P Braun, JR Ecker. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences, 113 (29), E4238-E4247.
C Rautengarten, B Ebert, L Liu, S Stonebloom, AM Smith-Moritz, M Pauly, A Orellana, H Vibe Scheller, JL Heazlewood. The Arabidopsis Golgi-localized GDP-L-fucose transporter is required for plant development. Nature Communications, 7 (1), 1-10.
S Simon, P Skůpa, T Viaene, M Zwiewka, R Tejos, P Klíma, M Čarná, J Rolčík, R De Rycke, I Moreno, PI Dobrev, A Orellana, E Zažímalová, J Friml. PIN6 auxin transporter at endoplasmic reticulum and plasma membrane mediates auxin homeostasis and organogenesis in Arabidopsis. New Phytologist, 211 (1), 65-74.
Santos FA, Morgante JS, Frere E, Milliones A, Sander M, Vianna JA, Dantas GPM. Evolutionary History of The Kelp Gull (Larus dominicanus) At The South Hemisphere Supported By Multilocus Evidence. Journal of Ornithology. 157, 1103-1113.
Fuentealba, C; Gálvez, L; Cobos, A; Olaeta, J.A; Defillipi, B; Chirinos, R; Campos, D; Pedreschi, R. Characterization of main primary and secondary metabolites and in vitro antioxidant and antihyperglycemic properties of the mesocarp tissue of three biotypes of Pouteria lucuma Food Chemistry, 190, 403-411.
JA O’Brien, A Vega, E Bouguyon, G Krouk, A Gojon, G Coruzzi, RA Gutiérrez. Nitrate transport, sensing, and responses in plants. Molecular Plant, 9 (6), 837-856.
V Araus, EA Vidal, T Puelma, S Alamos, D Mieulet, E Guiderdoni, RA Gutiérrez. Members of BTB gene family of scaffold proteins suppress nitrate uptake and nitrogen use efficiency. Plant Physiology, 171(2), 1523-1532.
B Díez, Johan AA Nylander, K Ininbergs, CL Dupont, AE Allen, S Yooseph, DB Rusch, B Bergman. Metagenomic analysis of the Indian Ocean picocyanobacterial community: structure, potential function and evolution. PLOS ONE. doi.org/10.1371/journal.pone.0155757
MA Hossain, C Henríquez-Valencia, M Gómez-Páez, J Medina, A Orellana, J Vicente-Carbajosa, J Zouhar . Identification of novel components of the unfolded protein response in Arabidopsis. Frontiers in Plant Science, 7, 650.
D Mandakovic, B Glasner, J Maldonado, P Aravena, M González, V Cambiazo, R Pulgar. Genomic-based restriction enzyme selection for specific detection of Piscirickettsia salmonis by 16S rDNA PCR-RFLP. Frontiers in Microbiology, 7, 643.
CM Pérez-Delgado, TC Moyano, M García-Calderón, J Canales, RA Gutiérrez, AJ Márquez, M Betti. Use of transcriptomics and co-expression networks to analyze the interconnections between nitrogen assimilation and photorespiratory metabolism. Journal of Experimental Botany, 67 (10), 3095-3108.
Campos, D; Aguilar-Gálvez, A; Pedreschi, R. Stability of fructooligosaccharides, sugars and color of yacon (Smallanthus sonchifolius) roots during blanching and drying. International Journal of Food Science & Technology, 51, 1177-1185.
Riquelme, J; Olaeta, J.A; Gálvez, L; Undurraga, P; Fuentealba, C; Osses, A, Orellana, J; Gallardo, J; Pedreschi, R. Nutritional and functional characterization of wild and cultivated Sarcocornia neei grown in Chile. Ciencia e Investigación Agraria, 43(2), 283-293.
Moreno-Pino, Mario, De la Iglesia, Rodrigo; Valdivia, Nelson; Henríquez, Carlos; Galán, Alex; Díez, Beatriz; Trefault, Nicole. Variation in coastal Antarctic microbial community composition at sub- mesoscale: spatial distance or environmental filtering? FEMS Microbiology Ecology. doi:10.1093/femsec/fiw088
C Muñoz-Espinoza, A Di Genova, J Correa, R Silva, A Maass, M González-Agüero, A Orellana, P Hinrichsen. Transcriptome profiling of grapevine seedless segregants during berry development reveals candidate genes associated with berry weight. BMC Plant Biology, 16 (1), 1-17.
Chirinos, R; Zorrilla, D; Aguilar-Gálvez, A; Pedreschi, R; Campos, D. Impact of roasting on fatty acids, tocopherols, phytosterols and phenolic compounds present in Plukenetia huayllabambana seed. Journal of Chemistry, Article ID 6570935.
S Lien, BF Koop, SR Sandve, JR Miller, MP Kent, T Nome, TR Hvidsten, JS Leong, DR Minkley, A Zimin, F Grammes, H Grove, A Gjuvsland, B Walenz, RA Hermansen, K Schalburg, EB Rondeau, A Di Genova, JKA Samy, J Olav Vik, MD Vigeland, L Caler, U Grimholt, S Jentoft, DI Våge, P de Jong, T Moen, M Baranski, Y Palti, DR Smith, JA Yorke, AJ Nederbragt, A Tooming-Klunderud, KS Jakobsen, X Jiang, D Fan, Y Hu, DA Liberles, R Vidal, P Iturra, SJM Jones, I Jonassen, A Maass, SW Omholt, WS Davidson. The Atlantic salmon genome provides insights into rediploidization. Nature, 533, 200–205.
Sánchez M, Ceci, ML, Gutiérrez D, Anguita C, Allende ML. Mechanosensory organ regeneration in zebrafish depends on a population of multipotent progenitor cells kept latent by Schwann cells. BMC Biology, 14, 27.
Chirinos, R; Necochea, O; Pedreschi, R; Campos, D. Sacha inchi (Plukenetia volubilis L.) Shell: an alternative source of phenolic compounds and antioxidants. International Journal of Food Science and Technology, 51, 986-993.
C Alvarez, A Aravena, T Tapia, E Rozenblum, L Solís, A Corvalán, M Camus, M Alvarez, D Munroe, A Maass, Pi Carvallo. Different Array CGH profiles within hereditary breast cancer tumors associated to BRCA1 expression and overall survival. BMC Cancer, 16 (1), 1-14.
FP Díaz, M Frugone, RA Gutiérrez, C Latorre. Nitrogen cycling in an extreme hyperarid environment inferred from δ15N analyses of plants, soils and herbivore diet. Scientific Reports, 6 (1), 1-11.
Chávez MN, Aedo G, Fierro FA, Allende ML, Egaña JT. Zebrafish as an emerging model organism to study angiogenesis in development and regeneration. Frontiers in Physiology, 7, 56. doi: 10.3389/fphys.2016.00056.
E Peña, M Gutiérrez, A Montecinos, M Muñoz, E Vargas, I Acuña, RA Gutiérrez, IM Rosales. First Report of Potato mop-top virus in Chile. Plant Disease, 100 (6), 1250-1250.
Mendieta, B; Olaeta, J.A; Pedreschi, R; Undurraga, P. Reduction of cold damage during cold storage of Hass avocado by a combined use of pre-conditioning and waxing. Scientia Horticulturae, 8, 119-124.
N Cordero, F Maza, H Navea-Perez, A Aravena, B Marquez-Fontt, P Navarrete, G Figueroa, M González, M Latorre, A Reyes-Jar. Different Transcriptional Responses from Slow and Fast Growth Rate Strains of Listeria monocytogenes Adapted to Low Temperature. Frontiers in Microbiology 7, 229.
Pedreschi, R; Hollak, S; Harkema, H; Otma, E; Robledo, P; Westra, E; Somhorst, D; Ferreyra, R; Defilippi, B. Impact of postharvest ripening strategies on Hass avocado fatty acid profiles. South African Journal of Botany, 103, 32-35.
Marco A. Molina-Montenegro, Carolina Galleguillos, Rómulo Oses, Ian S. Acuña-Rodríguez, Paris Lavín, Jorge Gallardo-Cerda, Cristian Torres-Díaz, Beatriz Díez, Gonzalo E. Pizarro, Cristian Atala. Adaptive phenotypic plasticity and competitive ability deployed under a climate change scenario may promote the invasionof Poa annua in Antarctica. Biological Invasions, 1-16. doi: 10.1007/s10530-015-1033-x
Dinka Mandakovic, Carla Trigo, Derly Andrade, Brenda Riquelme, Gabriela Gómez-Lillo, Katia Soto-Liebe, Beatriz Díez, Mónica Vásquez. CyDiv, a conserved and novel filamentous Cyanobacteria cell division protein, is involved in septum localization and cell tagging. Frontiers in Microbiology. doi: 10.3389/fmicb.00094
P Bordron, M Latorre, MP Cortés, M González, S Thiele, A Siegel, A Maass, D Eveillard. Putative bacterial interactions from metagenomic knowledge with an integrative systems ecology approach. Microbiology Open, 5 (1), 106-117.
JM Yáñez, S Naswa, ME López, L Bassini, K Correa, J Gilbey, L Bernatchez, A Norris, R Neira, JP Lhorente, PS Schnable, S Newman, A Mileham, N Deeb, A Di Genova, A Maass. Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations. Molecular Ecology Resources, 16(4), 1002-1011.
M Acuña, P Martínez, C Moraga, X He, M Moraga, B Hunter, P Nuernberg, RA Gutiérrez, M González, EH Schuchman, JL Santos, JF Miquel, P Mabe, S Zanlungo. Epidemiological, clinical and biochemical characterization of the p. (Ala359Asp) SMPD1 variant causing Niemann–Pick disease type B. European Journal of Human Genetics, 24 (2), 208-213.
S Donoso, F Durand, A Maass, S Petite. On automorphism groups of low complexity subshifts. Ergodic Theory and Dynamical Systems, 36 (1), 64-95.
V Acuña, A Aravena, C Guziolowski, D Eveillard, A Siegel, A Maass. Deciphering transcriptional regulations coordinating the response to environmental changes. BMC Bioinformatics, 17 (1), 1-12.
AM Almeida, C Urra, C Moraga, M Jego, A Flores, L Meisel, M González, R Infante, BG Defilippi, R Campos-Vargas, A Orellana. Proteomic analysis of a segregant population reveals candidate proteins linked to mealiness in peach. Journal of Proteomics, 131, 71-81.
Chávez MN, Schenk TL, Hopfner U, Centeno C, Machens H-G, Somlai-Schweiger I, Heinkenwalder M, Bono MR, Schwarz C, Allende ML, Nickelsen J, Egaña JT. Towards autotrophic tissue engineering: photosynthetic gene therapy for tissue regeneration. Biomaterials, 75, 25-36.
M Latorre, N Ehrenfeld, MP Cortés, D Travisany, M Budinich, A Aravena, M González, RA Bobadilla-Fazzini, P Parada, A Maass. Global transcriptional responses of Acidithiobacillus ferrooxidans Wenelen under different sulfide minerals. Bioresource Technology, 200, 29-34.
B Host, B Kra, A Maass. Variations on topological recurrence. Monatshefte für Mathematik, 179 (1), 57-89.
D Mandakovic, P Cabrera, R Pulgar, J Maldonado, P Aravena, M Latorre, V Cambiazo, M González. Complete genome sequence of Microbacterium sp. CGR1, bacterium tolerant to wide abiotic conditions isolated from the Atacama Desert. Journal of Biotechnology, 216(20), 149-150. https://doi.org/10.1016/j.jbiotec.2015.10.020
D Mandakovic, P Cabrera, R Pulgar, J Maldonado, P Aravena, M Latorre, V Cambiazo, M González. Complete genome sequence of Microbacterium sp. CGR1, bacterium tolerant to wide abiotic conditions isolated from the Atacama Desert. Journal of Biotechnology, 216, 149-150.
FA Urra, R Pulgar, R Gutiérrez, C Hodar, V Cambiazo, A Labra. Identification and molecular characterization of five putative toxins from the venom gland of the snake Philodryas chamissonis (Serpentes: Dipsadidae). Toxicon 108, 19-31.
Cotoras DD, Allende ML. Was the tailbud the ancestral center where the fin developmental program evolved in chordates? Contributions to Zoology, 84(4), 317-328.
F Durand, A Frank, A Mass. Eigenvalues of Toeplitz minimal systems of finite topological rank. Ergodic Theory and Dynamical Systems 35 (8), 2499-2528.
Rojas A, Aguilar R, Henriquez B, Lian JB, Stein JL, Stein GS, van Wijnen AJ, van Zundert B, Allende ML, Montecino M. Epigenetic Control of the Bone-master Runx2 Gene During Osteoblast-lineage Commitment by the Histone Demethylase JARID1B/KDM5B. Journal of Biological Chemistry, 290(47), 28329-42.
C Bolatto, C Parada, F Revello, A Zuniga, P Cabrera, V Cambiazo. Spatial and temporal distribution of Patched-related protein in the Drosophila embryo. Gene Expression Patterns 19 (1-2), 120-128.
A Vega, P Canessa, G Hoppe, I Retamal, TC Moyano, J Canales, RA Gutiérrez, J Rubilar. Transcriptome analysis reveals regulatory networks underlying differential susceptibility to Botrytis cinerea in response to nitrogen availability in Solanum lycopersicum. Frontiers in Plant Science 6, 911.
C Bolatto, C Parada, F Revello, A Zuniga, P Cabrera, V Cambiazo. Spatial and temporal distribution of Patched-related protein in the Drosophila embryo. Gene Expression Patterns 19 (1-2), 120-128.
EA Vidal, JM Álvarez, TC Moyano, RA Gutiérrez. Transcriptional networks in the nitrate response of Arabidopsis thaliana.Current Opinion in Plant Biology 27, 125-132.
K Correa, JP Lhorente, ME López, L Bassini, S Naswa, N Deeb, A Di Genova, A Maass, WS Davidson, JM Yáñez.Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes. BMC Genomics 16, 1-9.
R Pulgar, D Travisany, A Zuñiga, A Maass, V Cambiazo. Complete genome sequence of Piscirickettsia salmonis LF-89 (ATCC VR-1361) a major pathogen of farmed salmonid fish. Journal of biotechnology 212, 30-31.
E Riveras, JM Alvarez, EA Vidal, C Oses, A Vega, RA Gutiérrez. The calcium ion is a second messenger in the nitrate signaling pathway of Arabidopsis. Plant physiology 169 (2), 1397-1404.
Rodríguez-Marconi S, De la Iglesia R, Díez B, Fonseca CA, Hajdu E, Trefault N. Characterization of Bacterial, Archaeal and Eukaryote Symbionts from Antarctic Sponges Reveals a High Diversity at a Three-Domain Level and a Particular Signature for This Ecosystem. PLoS ONE 10(9), e0138837. doi:10.1371/journal.pone.0138837
Álvarez-Varas R, González-Acuña D, Vianna JA. Comparative phylogeography and morphological variation of co-distributed Phrygilus species (Birds, Thraupidae) from Central Andes. Molecular Phylogenetics and Evolution. 90, 150-163.
Pedreschi R, Lurie S. Advances and current challenges in understanding postharvest abiotic stresses in perishables. Postharvest Biology & Technology, 107, 77-89.
G Nuñez-Lillo, A Cifuentes-Esquivel, M Troggio, D Micheletti, R Infante, R Campos-Vargas, A Orellana, F Blanco-Herrera, C Meneses.Identification of candidate genes associated with mealiness and maturity date in peach [Prunus persica (L.) Batsch] using QTL analysis and deep sequencing. Tree Genetics & Genomes 11, 1-13.
C Henriquez‐Valencia, AA Moreno, O Sandoval‐Ibañez, I Mitina, F Blanco-Herrera, N Cifuentes-Esquivel, A Orellana. bZIP17 and bZIP60 Regulate the Expression of BiP3 and Other Salt Stress Responsive Genes in an UPR‐Independent Manner in Arabidopsis thaliana. Journal of Cellular Biochemistry 116 (8), 1638-1645.
- Estrella Alcamán, Camila Fernández, Antonio Delgado, Birgitta Bergman, Beatriz Díez. The cyanobacterium Mastigocladus covers the nitrogen demand of a terrestrial hot spring microbial mat. ISME Journal. 9: 2290-2303. doi:10.1038/ismej.2015.63
M Latorre, M Low, E Gárate, A Reyes-Jara, BE Murray, V Cambiazo, M González. Interplay between copper and zinc homeostasis through the transcriptional regulator Zur in Enterococcus faecalis. Metallomics 7 (7), 1137-1145.
R Pulgar, C Hödar, D Travisany, A Zuñiga, C Domínguez, A Maass, M González, V Cambiazo. Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system. BMC Genomics 16, 495. https://doi.org/10.1186/s12864-015-1716-9
R Pulgar, C Hödar, D Travisany, A Zuñiga, C Domínguez, A Maass, M González, V Cambiazo.Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system. BMC Genomics 16 (1), 1-21.
M Latorre, M Low, E Gárate, A Reyes-Jara, BE Murray, V Cambiazo, M González. Interplay between copper and zinc homeostasis through the transcriptional regulator Zur in Enterococcus faecalis. Metallomics, 7(7), 1137–1145. https://doi.org/10.1039/c5mt00043b
D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, A Maass et al.The BioMart community portal: an innovative alternative to large, centralized data repositories. Nucleic Acids Research 43, 589–598.
Alvarez M, Reynaert N, Chávez MN, Aedo G, Araya F, Hopfner U, Fernández J, Allende ML, Egaña JT. Generation of viable plant-vertebrate chimeras. PLoS One, 10(6), e0130295.
Sallaberry-Pincheira N, Gonzalez-Acuña D, Herrera-Tello Y, Dantas GPM, Luna-Jorquera G, Frere E, Valdés-Velasquez A, Simeone A, Vianna JA. Molecular epidemiology of avian malaria in wild breeding colonies of Humboldt and Magellanic penguins in South America. Ecohealth. 12(2), 267-77.
M Andrade, F Zaratti, R Forno, R Gutiérrez, I Moreno, F Velarde, F Ávila, M. Roca, MF Sánchez, P Laj, JL Jaffrezo, P Ginot, K Sellegri, M Ramonet, O Laurent, K Weinhold, A Wiedensohler, R Krejci, P Bonasoni, P Cristofanelli, D Whiteman, F Vimeux, A Dommergue, O Magand. Puesta en marcha de una nueva estación de monitoreo climático en los andes centrales de Bolivia: la estación Gaw/Chacaltaya. Revista Boliviana de Física 26 (26), 06-15.
Chirinos R, Pedreschi, R, Cedano I Campos D. Antioxidants from mashua (Tropaeolum tuberosum) control lipid oxidation in sacha inchi (Plukenetia volubilis L.) oild and raw ground pork meat. Journal of Food Processing and Preservation, 39, 2612-2619.
Guerrero-Ochoa M, Pedreschi R, Chirinos R. Optimized methodology for the extraction of protein from quinoa (Chenopodium quinoa Willd). International Journal of Food Science & Technology, 50, 1815-1822.
Chirinos R, Pedreschi R, Dominguez G, Campos, D. Comparison of the physico-chemical and phytochemical characteristics of the oil of two Plukenetia species. Food Chemistry, 173, 1203-1206.
M Zhao, C Andrieu-Soler, L Kowalczuk, MP Cortés, M Berdugo, M Dernigoghossian, F Halili, JC Jeanny,B Goldenberg, M Savoldelli, M El Sanharawi, MC Naud, W van Ijcken,R Pescini-Gobert, D Martinet, A Maass, J Wijnholds, P Crisanti, C Rivolta, Fr Behar-Cohen. A new CRB1 rat mutation links Müller glial cells to retinal telangiectasia. Journal of Neuroscience, 35 (15), 6093-6106.
J Parra-Rojas, AA Moreno, I Mitina, A Orellana. The dynamic of the splicing of bZIP60 and the proteins encoded by the spliced and unspliced mRNAs reveals some unique features during the activation of UPR in Arabidopsis thaliana. PLoS One 10 (4), e0122936
Schenck TL, Hopfner U, Chávez MN, Machens HG, Somlai-Schweiger I, Giunta RE, Bohne AV, Nickelsen J, Allende ML, Egaña JT. Photosynthetic biomaterials: a pathway towards autotrophic tissue engineering. Acta Biomaterialia, 15, 39-47.
T Ejsmentewicz, I Balic, D Sanhueza, R Barria, C Meneses, A Orellana, H Prieto, BG Defilippi, R Campos-Vargas. Comparative study of two table grape varieties with contrasting texture during cold storage. Molecules 20 (3), 3667-3680.
N Quiroz, N Rivas, T Del Pozo, J Burkhead, M Suazo, M González, M Latorre. Transcriptional activation of glutathione pathways and role of glucose homeostasis during copper imbalance. Biometals, 28(2), 321-328. https://doi.org/10.1007/s10534-015-9834-z
W Huang, C Ojaimi, JT Fallon, D Travisany, A Maass, L Ivanova, A Tomova, D González-Acuña HP Godfrey, FC Cabello. Genome sequence of Borrelia chilensis VA1, a South American member of the Lyme borreliosis group. Genome Announcements 3 (1), e01535-14.
MJ Arismendi, R Almada, P Pimentel, A Bastias, A Salvatierra, P Rojas, P Hinrichsen, M Pinto, A Di Genova, D Travisany, A Maass, B Sagredo.Transcriptome sequencing of Prunus sp. rootstocks roots to identify candidate genes involved in the response to root hypoxia. Tree Genetics & Genomes 11, 1-16.
TC Moyano, EA Vidal, O Contreras-López, RA Gutiérrez. Constructing simple biological networks for understanding complex high-throughput data in plants. Plant Functional Genomics: Methods and Protocols, 503-526.
BOOKS
D Travisany, D Galarce, A Maass, R Assar. Predicting the metagenomics content with multiple CART trees. In: Zazzu et al. (eds). Mathematical Models in Biology: Bringing Mathematics to Life, 145-160.
R Assar, A Maass, J Fernández, E Kofman, MA Montecino. Modeling cell decisions in bone formation. In: Tost & Vasilieva (eds.) Analysis, Modelling, Optimization, and Numerical Techniques: ICAMI, Springer Proceedings in Mathematics & Statistics, vol 121. Springer, Cham.
RA Bobadilla-Fazzini, MP Cortés, A Maass, P Parada. Sulfobacillus thermosulfidooxidans strain Cutipay enhances chalcopyrite bioleaching under moderate thermophilic conditions in the presence of chloride ion. AMB Express, 4, 1-5
D Travisany, MP Cortés, M Latorre, A Di Genova, M Budinich, RA Bobadilla-Fazzini, P Parada, M González, A Maass.A new genome of Acidithiobacillus thiooxidans provides insights into adaptation to a bioleaching environment. Research in Microbiology, 165 (9), 743-752.
Ceci ML, Mardones-Krsulovic C, Sánchez M, Valdivia L, Allende ML. Axon-Schwann cell interactions during peripheral nerve regeneration in zebrafish larvae. Neural Development, 9, 22.
JM Alvarez, E Riveras, EA Vidal, DE Gras, O Contreras‐López, KP Tamayo, F Aceituno, I Gómez, S Ruffel, L Lejay, X Jordana, RA Gutiérrez. Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots. The Plant Journal, 80 (1), 1-13.
EA Vidal, TC Moyano, J Canales, RA Gutiérrez. Nitrogen control of developmental phase transitions in Arabidopsis thaliana. Journal of Experimental Botany, 65 (19), 5611-5618.
G Argüello, P Martinez, J Pena, O Chen, F Platt, S Zanlungo, M González. Hepatic metabolic response to restricted copper intake in a Niemann–Pick C murine model. Metallomics, 6 (8), 1527-1539.
F Abarca, SE Gutierrez-Maldonado, P Parada, P Martinez, A Maass, T Perez-Acle. Insights on the structure and stability of Licanantase: a trimeric acid-stable coiled-coil lipoprotein from Acidithiobacillus thiooxidans. PeerJ 2, e457.
C Rautengarten, B Ebert, I Moreno, H Temple, T Herter, B Link, …The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis. Proceedings of the National Academy of Sciences 111 (31), 11563-11568.
R Assar, MA Montecino, A Maass, DJ Sherman. Modeling acclimatization by hybrid systems: Condition changes alter biological system behavior models. Biosystems, 121, 43-53.
I Balic, T Ejsmentewicz, D Sanhueza, C Silva, T Peredo, P Olmedo, M Barros, JC Verdonk, R Paredes, C Meneses, H Prieto, A Orellana, BG Defilippi, R Campos-Vargas. Biochemical and physiological study of the firmness of table grape berries. Postharvest Biology and Technology 93, 15-23.
Lurie, S; Pedreschi, R. Fundamental aspects of postharvest heat treatments. Horticulture Research, 1, 14030.
T Downarowicz, D Travisany, M Montecino, A Maass. Symbolic extensions applied to multiscale structure of genomes. Acta Biotheoretica, 62, 145-169.
Pedreschi, R., Muñoz, P., Robledo, P., Becerra, C., Defilippi, B, van Eekelen, H., Mumm, R., Westra, E, de Vos, R. Metabolomics analysis of postharvest ripening heterogeneity of ‘Hass’ avocadoes. Postharvest Biology and Technology, 92, 172-179.
LM Ruiz, EL Jensen, RI Bustos, G Argüelloa, R Gutierrez‐Garcia, M González, C Hernández, R Paredes, F Simon, C Riedel, D Ferrick, AA Elorza. Adaptive responses of mitochondria to mild copper deprivation involve changes in morphology, OXPHOS remodeling and bioenergetics. Journal of Cellular Physiology, 229 (5), 607-619.
Marín, J.C.; Orozco-terWengel, P.; Romero, K.: Vásquez, J.P.; Varas, V.; Vianna J.A. Cross-amplification of nonspecific microsatellites markers: a useful tool to study endangered/vulnerable species of southern Andes deer. Genetics and Molecular Research, 13 (2): 3193-3200.
F Peña M., E Poulin, GPM Dantas, D González-Acuña, MV Petry, JA Vianna. Have Historical Climate Changes Affected Gentoo Penguin (Pygoscelis papua) Populations in Antarctica? Plos One, 9(4), 1-8.
EA Vidal, JM Álvarez, RA Gutiérrez. Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1. 1 nitrate transport function. Plant Signaling & Behavior, 9 (6), e28501.
M Dernigoghossian, PR Rothschild, S Salah, M Paz, W Van Ijken, A Maass, P Lassiaz, FF Behar-Cohen C Andrieu-Soler. Difference in gene expression between the macula and the peripheral retina: genome-wide study on monkey. Investigative Ophthalmology & Visual Science, 55 (13), 4991-4991.
Lange S, Aranda E, Gonzalez I, Valenzuela R, Pinto M, Elliot M, Alvarez M, Henriquez S, Velasquez EV, Orge F, Oliva B, Gonzalez P, Villalon M, Cautivo KM, Kalergis AM, Pereira K, Mendoza C, Saez C, Kato S, Cuello MA, Parborell F, Irusta G, Palma V, Allende ML, Owen GI. Independent anti-angiogenic capacities of coagulation factors X and Xa. Journal of Cellular Physiology, 229, 1673-1680.
M Latorre, J Galloway-Peña, JH Roh, M Budinich, A Reyes-Jara, BE Murray, A Maass, M González. Enterococcus faecalis reconfigures its transcriptional regulatory network activation at different copper levels. Metallomics, 6 (3), 572-581.
Moya-Díaz J, Peña O, Sánchez M, Ureta D, Reynaert N, Anguita-Salinas C, Marín G, Allende ML. Electroablation: a method for axotomy and localized tissue injury. BMC Developmental Biology, 14(1), 7.
C Hodar, A Zuñiga, R Pulgar, D Travisany, C Chacon, M Pino, A Maass, V Cambiazo. Comparative gene expression analysis of Dtg, a novel target gene of Dpp signaling pathway in the early Drosophila melanogaster embryo. Gene, 535 (2), 210-217.
J Canales, TC Moyano, E Villarroel, RA Gutiérrez. Systems analysis of transcriptome data provides new hypotheses about Arabidopsis root response to nitrate treatments. Frontiers in Plant Science, 5, 22.
A Di Genova, AM Almeida, C Muñoz-Espinoza, P Vizoso, D Travisany, C Moraga, M Pinto, P Hinrichsen, A Orellana, A Maass.Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants. BMC Plant Biology, 14 (1), 1-12.
Vianna JA, Cortes M, Ramos B, Sallaberry-Pincheira N., Daniel González-Acuña, Gisele P. M. Dantas, João Morgante, Alejandro Simeone & Guillermo Luna-Jorquera. Changes in abundance and distribution of the humboldt penguin Spheniscus humboldti. Marine Ornithology, 42, 153-159.
2013 - 2004
Valenzuela-Guerra, P.; Morales-Moraga, D.; González-Acuña, D. Vianna, JA. 2013. Geographic morphological variation of Gentoo penguin (Pygoscelis papua) and sex identification: using morphometric characters and molecular markers. Polar Biology. 36:1723–1734.
Trinca C.S., Rosas, F.C.W., De Thoisy, B., Waldemarin, H.F., Koepfli, K-P, Vianna, J.A., Eizirik, E. 2012. Phylogeography and demographic history of the Neotropical otter (Lontra longicaudis). Journal of Heredity, 103(4):479–492.
Sallaberry-Pincheira, N.; Garin, C.F.; Gonzalez-Acuña, D.A.; Sallaberry, M.A.; Vianna J.A. 2011. Genetic divergence of Chilean long-tailed snake (Philodryas chamissonis) across latitudes: conservation threats for different lineages. Diversity and Distributions, 17: 152–162.
Fuentes-Hurtado, M.; Marín, J. C.; González-Acuña, D.; Verdugo, C.; Vidal, F.; Vianna, J.A. 2011.Molecular divergence between insular and continental Pudu deer (Pudu puda) populations in the Chilean Patagonia. Studies on Neotropical Fauna and Environment. 46(1): 23–33.
Vianna, J.A.; Medina-Vogel, G.; Chehébar, C.; Olavarría, C.; Sielfeld, V.; Faugeron. S. 2011. Phylogeography of Patagonian otter (Lontra provocax): evidence of adaptive divergence to marine habitat or signature of southern glacial refugia? BMC Evolutionary Biology. 11:53.
Soto-Azat, C., Boher, F., Flores, G., Monsalve, R., Santibáñez, A., Vianna, J. and Medina-Vogel, G. (2011) Veterinary Management of Marine Otters (Lontra felina) in Ecological Studies in Chile. Proceedings of Xth International Otter Colloquium, IUCN Otter Spec. Group Bull. 28A: 114 126
https://www.iucnosgbull.org/Volume28A/Soto-Azat_et_al_2011.html
Silva-Rodríguez, E.; Aleuy, O. A. Fuentes-Hurtado, M.; Vianna, J.A.; Vidal, F.; Jiménez, J.E. 2011. Priorities for the conservation of the pudu (Pudu puda) in southern South America. Animal Production Science. 51:375–377.
Vianna, J.A.; Ayerdi, P.; Medina-Vogel, G.; Mangel, J.C.; Zeballos, H.; Apaza, M.; Faugeron, S. 2010. Phylogeography of the marine otter (Lontra felina): historical and contemporary factors determining its distribution. Journal of Heredity. 101(6):676–689.
Caballero S, Heimeier D, Trujillo F, Vianna J, Barrios Garrido H, Montiel MG, Beltran S, Marmontel M, Santos M, Rossi Santos M. 2010. Initial description of Major Histocompatibility Complex variation at two Class II loci (DQA-DQB) in Sotalia fluviatilis and Sotalia guianensis. Latin American Journal of Aquatic Mammals ISSN: 1676-7497, vol:1 fasc: n/a págs: 1 – 10.
Caballero S, Heimeier D, Trujillo F, Vianna J, Barrios Garrido H, Montiel MG, Beltran S, Marmontel M, Santos M, Rossi Santos, M.; Santos, F. 2010. Mitochondrial DNA diversity, differentiation and phylogeography of the South American riverine and coastal dolphins Sotalia fluviatilis and Sotalia guianensis. Latin American Journal of Aquatic Mammals ISSN: 1676-7497, vol:1 fasc: N/A págs: 11 – 20.
Muschett, G.; Bonacic, C.; Vianna, J. A. 2009. A non-invasive sampling method for genetic analysis of the west-indian manatee (Trichechus manatus). Marine Mammal Science. 25(4): 955-963.
Medina-Vogel, G.; Merino, L.O.; Monsalve Alarcón, R.; Vianna, J.A. 2008. Coastal–marine discontinuities, critical patch size and isolation: implications for marine otter conservation. Animal Conservation. 11:57-64.
Caballero, S.; Trujillo, F.; Vianna, J.A.; Barrios-Garrido, H.; Montiel, M.G.; Beltrán-Pedreros, S.; Marmontel, M.; Santos, M.C.O.; Rossi, M.R.; Santos, F.R.; Baker, C.S. 2007. Taxonomic status of South American coastal and riverine dolphins Sotalia spp., with insights into cetacean molecular systematics. Marine Mammal Science. 23(2):358-386.
Vianna, J.A.; Bonde, R.K.; Caballero, S.; Giraldo, J.P.; Lima, R.P.; Clark, A.M.; Marmontel, M.; Morales-Vela, B.; de Sousa, M.J.; Parr, L.; Rodríguez-Lopez, M.; Mignucci-Giannoni, A.A.; Powell, J.;Santos, F.R. 2006. Phylogeography, Phylogeny and Hybridization in trichechids sirenians: implications for manatee conservation. Molecular Ecology, 15:433-447.
